CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_6g027710
(
Medicago truncatula
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
MTR_6g027710
T245473_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.717
0.717
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.717
0.717
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KEH25566
LOB
40
139
PCGACKFLRRKCSSGCIFAPYFGTDQGAAKFAAVHKVFGASNVSKHLSNIPASHRHEAAATISYEAQARLADPVYGCVSTLLALQQQVAAMQAEVSMMQT
Links
Other
LOB
family TFs
Other
Medicago truncatula
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_19716
Cicer arietinum
Ca_19716
I
0.909
GLYMA19G30200
Glycine max
GLYMA19G30200
I
0.828
GLYMA02G27230
Glycine max
GLYMA02G27230
I
0.818
cassava25975.m1
Manihot esculenta
cassava25975.m1
I
0.808
Aquca_009_00560
Aquilegia coerulea
Aquca_009_00560
I
0.808
cassava15337.m1
Manihot esculenta
cassava15337.m1
I
0.808
POPTR_0013s06070
Populus trichocarpa
POPTR_0013s06070
I
0.808
Pm028642
Prunus mume
Pm028642
I
0.798
30072.m000955
Ricinus communis
30072.m000955
I
0.798
GLYMA10G11031
Glycine max
GLYMA10G11031
I
0.798
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.798
Bo1g153580
Brassica oleracea
Bo1g153580
I
0.788
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.788
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.788
Bra036436
Brassica rapa
Bra036436
I
0.788
chr1.LjT38H23.30.nd
Lotus japonicus
chr1.LjT38H23.30.nd
I
0.788
LBD20
Arabidopsis thaliana
AT3G03760
I
0.788
Eucgr.K01522
Eucalyptus grandis
Eucgr.K01522
I
0.788
Thhalv10021301m.g
Eutrema salsugineum
Thhalv10021301m.g
I
0.788
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.788
mgf006429m
Mimulus guttatus
mgf006429m
I
0.788
Gorai.007G346200
Gossypium raimondii
Gorai.007G346200
I
0.788
LBD20
Vitis vinifera
VIT_08s0056g01650
I
0.788
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.788
orange1.1g042813m.g
Citrus sinensis
orange1.1g042813m.g
I
0.778
MDP0000322059
Malus domestica
MDP0000322059
I
0.778
Ciclev10021843m.g
Citrus clementina
Ciclev10021843m.g
I
0.778
TCM_025849
Theobroma cacao
TCM_025849
I
0.778
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.778
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.773
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.768
Cla002965
Citrullus lanatus
Cla002965
I
0.768
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.759
PGSC0003DMG400022454
Solanum tuberosum
PGSC0003DMG400022454
I
0.758
Cucsa.338130
Cucumis sativus
Cucsa.338130
I
0.747
Solyc01g098220.1
Solanum lycopersicum
Solyc01g098220.1
I
0.747
chr2.LjT13P17.280.nd
Lotus japonicus
chr2.LjT13P17.280.nd
I
0.747
gene24461-v1.0-hybrid
Fragaria vesca
gene24461-v1.0-hybrid
I
0.747
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.737
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.737
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.737
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.737
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.737
GSMUA_Achr9G10530_001
Musa acuminata
GSMUA_Achr9G10530_001
I
0.737
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.727
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.727
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.727
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
0.727
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.727
Bra004693
Brassica rapa
Bra004693
I
0.727
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.727
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.727
GSMUA_AchrUn_randomG10470_001
Musa acuminata
GSMUA_AchrUn_randomG10470_001
I
0.727
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.727
SapurV1A.1704s0040
Salix purpurea
SapurV1A.1704s0040
I
0.727
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.727
Bo4g191530
Brassica oleracea
Bo4g191530
I
0.727
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
0.727
Bo4g016000
Brassica oleracea
Bo4g016000
I
0.727
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.727
OBART03G10450
Oryza barthii
OBART03G10450
I
0.727
OS03G0246900
Oryza sativa
OS03G0246900
I
0.727
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.727
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.727
BRADI3G22510
Brachypodium distachyon
BRADI3G22510
I
0.727
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.727
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.727
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.727
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.727
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.727
SELMODRAFT_59642
Selaginella moellendorffii
SELMODRAFT_59642
I
0.724
SELMODRAFT_49270
Selaginella moellendorffii
SELMODRAFT_49270
I
0.724
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.721
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.717
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.717
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.717
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.717
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.717
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.717
TCM_005496
Theobroma cacao
TCM_005496
I
0.717
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.717
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.717
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.717
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
0.717
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.717
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.717
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.717
LBD16
Arabidopsis thaliana
AT2G42430
D
0.717
30174.m008898
Ricinus communis
30174.m008898
I
0.717
Pm017936
Prunus mume
Pm017936
I
0.717
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.717
Bra016877
Brassica rapa
Bra016877
I
0.717
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.707
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.707
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.707
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.707
Cla007068
Citrullus lanatus
Cla007068
I
0.707
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.707
gene19355-v1.0-hybrid
Fragaria vesca
gene19355-v1.0-hybrid
I
0.707
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.707
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.707
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.702