MTR_6g027710 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_6g027710 T245473_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.717 0.717
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.717 0.717
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH25566 LOB 40 139

Links

Other LOB family TFs
Other Medicago truncatula TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD16 Arabidopsis thaliana AT2G42430 D 0.717
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.788
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.707
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.768
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.773
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.778
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.759
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.737
mgf006429m Mimulus guttatus mgf006429m I 0.788
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.808
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.747
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.717
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.727
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.717
Ca_19716 Cicer arietinum Ca_19716 I 0.909
Cla002965 Citrullus lanatus Cla002965 I 0.768
Cla007068 Citrullus lanatus Cla007068 I 0.707
Pm017936 Prunus mume Pm017936 I 0.717
Pm028642 Prunus mume Pm028642 I 0.798
30072.m000955 Ricinus communis 30072.m000955 I 0.798
30174.m008898 Ricinus communis 30174.m008898 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.808
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.808
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.788
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.727
MDP0000322059 Malus domestica MDP0000322059 I 0.778
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.717
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.778
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.727
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.727
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.707
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.727
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.727
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.788
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.788
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.707
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.788
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.707
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.788
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.788
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.778
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.717
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.717
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.788
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.707
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.747
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.747
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.727
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.717
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.717
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.798
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.828
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.717
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.737
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.707
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.727
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.737
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.818
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.707
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.788
LBD20 Arabidopsis thaliana AT3G03760 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.727
Bo1g153580 Brassica oleracea Bo1g153580 I 0.788
Bo4g016000 Brassica oleracea Bo4g016000 I 0.727
Bo4g191530 Brassica oleracea Bo4g191530 I 0.727
Bra004693 Brassica rapa Bra004693 I 0.727
Bra016877 Brassica rapa Bra016877 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.788
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.737
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.727
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.727
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.798
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.717
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.724
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.724
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.707
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.747
TCM_005496 Theobroma cacao TCM_005496 I 0.717
TCM_025849 Theobroma cacao TCM_025849 I 0.778
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.727
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.808
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.702
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.721
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.727
OBART03G10450 Oryza barthii OBART03G10450 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.727
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.727
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.727
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.727
OS03G0246900 Oryza sativa OS03G0246900 I 0.727
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.758
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.717