MTR_7g074990 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_7g074990 T245481_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.788 0.788
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.788 0.788
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.788 0.788
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.788 0.788
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.717 0.717
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES79939 LOB 20 119

Links

Other LOB family TFs
Other Medicago truncatula TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_20428 Cicer arietinum Ca_20428 I 0.859
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.828
Pm017936 Prunus mume Pm017936 I 0.818
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.818
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.818
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.808
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.808
Cla007068 Citrullus lanatus Cla007068 I 0.808
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.808
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.808
30174.m008898 Ricinus communis 30174.m008898 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.808
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.808
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.808
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.808
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.798
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.798
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.798
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.798
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.798
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.798
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.798
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.798
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.798
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.798
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.798
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.798
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.798
Bra004910 Brassica rapa Bra004910 I 0.798
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.788
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.788
Bra008514 Brassica rapa Bra008514 I 0.788
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.788
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.788
OS03G0246900 Oryza sativa OS03G0246900 I 0.788
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.788
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.788
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.788
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.788
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.788
Ca_19598 Cicer arietinum Ca_19598 I 0.788
LBD18 Arabidopsis thaliana AT2G45420 D 0.788
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.788
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.788
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.788
LBD30 Arabidopsis thaliana AT4G00220 D 0.788
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.788
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.788
OBART03G10450 Oryza barthii OBART03G10450 I 0.788
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.788
Bo4g024620 Brassica oleracea Bo4g024620 I 0.788
Bo2g097560 Brassica oleracea Bo2g097560 I 0.788
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.788
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.788
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.788
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.788
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.788
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.788
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.788
OS10G0162600 Oryza sativa OS10G0162600 I 0.778
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.778
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
Bo9g002160 Brassica oleracea Bo9g002160 I 0.778
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.778
Bra037323 Brassica rapa Bra037323 I 0.778
Bra040311 Brassica rapa Bra040311 I 0.778
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.778
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.778
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.778
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.778
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.778
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.778
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.778
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.778
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.778
OB10G12360 Oryza brachyantha OB10G12360 I 0.778
Bo4g195520 Brassica oleracea Bo4g195520 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.768
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.768
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.768
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.768
PK25573.1 Cannabis sativa PK25573.1 I 0.768
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.768
mgf020735m Mimulus guttatus mgf020735m I 0.768
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.768
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.768
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.758
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.758
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.758
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.758
LBD31 Arabidopsis thaliana AT4G00210 I 0.758
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.747
Pm017935 Prunus mume Pm017935 I 0.747
30174.m008897 Ricinus communis 30174.m008897 I 0.747
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.747
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.747
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.747
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.747
TCM_005497 Theobroma cacao TCM_005497 I 0.747
LBD20 Arabidopsis thaliana AT3G03760 I 0.737
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.737
Cla021625 Citrullus lanatus Cla021625 I 0.737
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.737
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.737
Bo1g153580 Brassica oleracea Bo1g153580 I 0.737
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.737
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.737
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.737
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.737
MDP0000429067 Malus domestica MDP0000429067 I 0.737
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.737
Cla007069 Citrullus lanatus Cla007069 I 0.737
Bra036436 Brassica rapa Bra036436 I 0.737
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.737
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.737
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.737
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.734
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.727
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.727
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.727
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.727
mgf006429m Mimulus guttatus mgf006429m I 0.727
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.727
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.727
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.727
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.727
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.727
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.727
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.727
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.727
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.727
OS03G0149100 Oryza sativa OS03G0149100 I 0.727
Bra037322 Brassica rapa Bra037322 I 0.727
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.727
OB03G13890 Oryza brachyantha OB03G13890 I 0.727
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.727
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.727
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.727
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.727
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.727
Bo9g002150 Brassica oleracea Bo9g002150 I 0.727
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.727
28428.m000040 Ricinus communis 28428.m000040 I 0.727
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.727
Si040019m.g Setaria italica Si040019m.g I 0.727
Cla006087 Citrullus lanatus Cla006087 I 0.727
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.727
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.727
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.727
OBART03G03830 Oryza barthii OBART03G03830 I 0.727
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.717
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.717
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.717
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.717
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.717
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.717
LBD19 Arabidopsis thaliana AT2G45410 D 0.717
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.717
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.717
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.717
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.717
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.717
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.717
Ca_12214 Cicer arietinum Ca_12214 I 0.717
Pm028642 Prunus mume Pm028642 I 0.717
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.717
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.717
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.717
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.717
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.717
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.717
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.717
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.717
mgf020773m Mimulus guttatus mgf020773m I 0.717
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.717
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.707
PK23185.1 Cannabis sativa PK23185.1 I 0.707
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.707
MDP0000322059 Malus domestica MDP0000322059 I 0.707
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.707
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.707
TCM_005496 Theobroma cacao TCM_005496 I 0.707
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.707
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.707
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.707
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.707
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.707
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.707
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.707
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.707
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.707
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.707
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.707
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.707
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.707
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.707
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.707
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
Ca_07763 Cicer arietinum Ca_07763 I 0.707
Cla002965 Citrullus lanatus Cla002965 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707