MTR_7g075230 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_7g075230 T245482_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.788 0.788
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.788 0.788
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.788 0.788
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.788 0.788
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.727 0.727
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES79961 LOB 12 113

Links

Other LOB family TFs
Other Medicago truncatula TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.879
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.869
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.869
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.869
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.859
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.859
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.859
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.848
Pm017935 Prunus mume Pm017935 I 0.848
MDP0000429067 Malus domestica MDP0000429067 I 0.848
30174.m008897 Ricinus communis 30174.m008897 I 0.848
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.838
Cla007069 Citrullus lanatus Cla007069 I 0.838
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.838
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.838
PK25573.1 Cannabis sativa PK25573.1 I 0.838
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.838
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.828
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.828
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.828
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.828
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.828
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.828
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.828
30174.m008898 Ricinus communis 30174.m008898 I 0.828
Pm017936 Prunus mume Pm017936 I 0.828
Ca_19598 Cicer arietinum Ca_19598 I 0.828
Cla007068 Citrullus lanatus Cla007068 I 0.828
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.828
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.828
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.828
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.818
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.818
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.818
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.818
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.818
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.818
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.808
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.808
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.808
OS03G0246900 Oryza sativa OS03G0246900 I 0.808
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.808
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.808
TCM_005497 Theobroma cacao TCM_005497 I 0.808
OBART03G10450 Oryza barthii OBART03G10450 I 0.808
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.808
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.808
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.808
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.808
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.808
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.798
Bra040311 Brassica rapa Bra040311 I 0.798
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.798
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.798
Bo4g195520 Brassica oleracea Bo4g195520 I 0.798
mgf020735m Mimulus guttatus mgf020735m I 0.798
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.798
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.798
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.798
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.798
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.788
LBD19 Arabidopsis thaliana AT2G45410 D 0.788
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.788
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.788
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.788
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.788
Bo4g024620 Brassica oleracea Bo4g024620 I 0.788
LBD18 Arabidopsis thaliana AT2G45420 D 0.788
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.788
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.788
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.788
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.778
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.778
Bra004910 Brassica rapa Bra004910 I 0.778
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.778
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.778
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.778
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.778
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.768
LBD31 Arabidopsis thaliana AT4G00210 I 0.768
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.768
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.768
OB10G12360 Oryza brachyantha OB10G12360 I 0.768
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.768
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.768
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.768
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.758
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.758
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.758
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.758
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.758
Ca_20429 Cicer arietinum Ca_20429 I 0.758
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.747
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.747
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.747
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
Bo4g024610 Brassica oleracea Bo4g024610 I 0.747
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.747
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.747
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.747
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.747
Bra040312 Brassica rapa Bra040312 I 0.747
OS10G0162600 Oryza sativa OS10G0162600 I 0.747
Cla002965 Citrullus lanatus Cla002965 I 0.747
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.747
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.747
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.737
MDP0000254224 Malus domestica MDP0000254224 I 0.737
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
Bra037323 Brassica rapa Bra037323 I 0.737
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.737
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.737
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.737
Bo9g002160 Brassica oleracea Bo9g002160 I 0.737
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.737
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.737
Bra008514 Brassica rapa Bra008514 I 0.737
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.727
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.727
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.727
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.727
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
Bra004908 Brassica rapa Bra004908 I 0.727
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.727
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.727
TCM_005496 Theobroma cacao TCM_005496 I 0.727
LBD30 Arabidopsis thaliana AT4G00220 D 0.727
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.717
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.717
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.717
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.717
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
TCM_004106 Theobroma cacao TCM_004106 I 0.717
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.717
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.717
PK23185.1 Cannabis sativa PK23185.1 I 0.717
Bra037322 Brassica rapa Bra037322 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
LBD20 Arabidopsis thaliana AT3G03760 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.717
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.717
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.717
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.717
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.717
mgf006429m Mimulus guttatus mgf006429m I 0.717
Pm020629 Prunus mume Pm020629 I 0.717
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.717
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.707
Ca_20428 Cicer arietinum Ca_20428 I 0.707
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.707
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.707
TCM_025849 Theobroma cacao TCM_025849 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
OB03G20590 Oryza brachyantha OB03G20590 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Cla021625 Citrullus lanatus Cla021625 I 0.707
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.707
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.707
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.707
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Pm028642 Prunus mume Pm028642 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.707
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707