OB03G13880 (Oryza brachyantha)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OB03G13880 T245501_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.717 0.717
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.717 0.717
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G13880.1 LOB 13 112

Links

Other LOB family TFs
Other Oryza brachyantha TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29883.m002035 Ricinus communis 29883.m002035 I 0.707
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.727
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.737
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.737
BGIOSGA011866 Oryza indica BGIOSGA011866 I 0.990
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Bo8g092560 Brassica oleracea Bo8g092560 I 0.707
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Bra004693 Brassica rapa Bra004693 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.707
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.768
BRADI1G75120 Brachypodium distachyon BRADI1G75120 N 0.889
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.737
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
Cla006088 Citrullus lanatus Cla006088 I 0.717
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.707
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.707
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.747
GRMZM2G092483 Zea mays GRMZM2G092483 I 0.919
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.737
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.717
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.707
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.727
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.737
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.727
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.717
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.737
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.717
LBD16 Arabidopsis thaliana AT2G42430 D 0.717
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.737
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.747
LPERR03G03460 Leersia perrieri LPERR03G03460 I 0.970
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.737
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.909
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.758
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.727
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.747
OB02G44330 Oryza brachyantha OB02G44330 I 0.747
OB03G13890 Oryza brachyantha OB03G13890 I 0.737
OBART03G03820 Oryza barthii OBART03G03820 I 0.869
OBART03G03830 Oryza barthii OBART03G03830 I 0.737
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.737
OGLUM03G03700 Oryza glumaepatula OGLUM03G03700 I 0.869
OLONG_020840 Oryza longistaminata OLONG_020840 N 0.889
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.737
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.737
OMERI07G01670 Oryza meridionalis OMERI07G01670 N 0.889
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.737
ONIVA03G03570 Oryza nivara ONIVA03G03570 I 0.869
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.737
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.727
OPUNC03G03510 Oryza punctata OPUNC03G03510 I 0.990
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.737
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.737
ORGLA03G0035800 Oryza glaberrima ORGLA03G0035800 I 0.990
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.737
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.737
ORUFI03G03540 Oryza rufipogon ORUFI03G03540 I 0.869
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.737
OS02G0820500 Oryza sativa OS02G0820500 I 0.737
OS03G0149000 Oryza sativa OS03G0149000 I 0.990
OS03G0149100 Oryza sativa OS03G0149100 I 0.737
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.747
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.737
Pavir.Ib00282 Panicum virgatum Pavir.Ib00282 I 0.909
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.737
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.727
Pavir.J24246 Panicum virgatum Pavir.J24246 I 0.919
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.747
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.707
Pm020629 Prunus mume Pm020629 I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.737
Sb01g047000 Sorghum bicolor Sb01g047000 I 0.909
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.747
Si019578m.g Setaria italica Si019578m.g I 0.747
Si037727m.g Setaria italica Si037727m.g I 0.919
Si040019m.g Setaria italica Si040019m.g I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.909
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.768
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.758
Traes_4BL_F71DE14F7 Triticum aestivum Traes_4BL_F71DE14F7 N 0.909
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.707
Traes_4BS_B43A99154 Triticum aestivum Traes_4BS_B43A99154 N 0.909
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.899
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.758
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.747
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.747
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.747