OB03G20590 (Oryza brachyantha)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OB03G20590 T245503_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.846 0.846
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.846 0.846
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.824 0.824
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.824 0.824
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.802 0.802
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.802 0.802
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.802 0.802
LBD19
M06960_2.00 		Arabidopsis thaliana
CCKKAAAWHMMGSND
HNSCKKDWTTTMMGG		 Dap-seq
OMalley et al.(2016)
LBD19_col_a 		0.736 0.736
LBD19
M06961_2.00 		Arabidopsis thaliana
WWYCCGG
CCGGRWW		 Dap-seq
OMalley et al.(2016)
LBD19_colamp_a 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G20590.1 LOB 36 127

Links

Other LOB family TFs
Other Oryza brachyantha TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.977
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.967
TCM_005496 Theobroma cacao TCM_005496 I 0.902
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.901
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.900
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.894
MDP0000254224 Malus domestica MDP0000254224 I 0.891
OB10G12360 Oryza brachyantha OB10G12360 I 0.879
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.872
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.869
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.869
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.869
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.869
OBART03G10450 Oryza barthii OBART03G10450 I 0.869
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.869
OS03G0246900 Oryza sativa OS03G0246900 I 0.869
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.869
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.869
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.868
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.868
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.859
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.859
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.859
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.859
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.857
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.857
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.848
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.848
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.848
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.838
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.838
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.835
Cla007068 Citrullus lanatus Cla007068 I 0.828
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.828
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.828
30174.m008898 Ricinus communis 30174.m008898 I 0.828
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.828
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.828
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.828
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.828
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.828
Pm017936 Prunus mume Pm017936 I 0.828
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.828
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.824
Bra001087 Brassica rapa Bra001087 I 0.824
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.818
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.818
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.818
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.818
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.818
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.818
PK25573.1 Cannabis sativa PK25573.1 I 0.813
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.813
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.813
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.808
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.808
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.808
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.808
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.808
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.807
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.802
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.802
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.798
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.798
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.798
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.798
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.798
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.798
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.798
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.798
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.798
OS10G0162600 Oryza sativa OS10G0162600 I 0.798
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.793
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.793
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.791
LBD20 Arabidopsis thaliana AT3G03760 I 0.791
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.791
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.791
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.791
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.791
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.791
Cla021625 Citrullus lanatus Cla021625 I 0.791
Pm028642 Prunus mume Pm028642 I 0.791
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.791
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.789
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.780
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.780
PK23185.1 Cannabis sativa PK23185.1 I 0.780
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.779
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.778
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.778
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.778
Bo4g024620 Brassica oleracea Bo4g024620 I 0.778
LBD18 Arabidopsis thaliana AT2G45420 D 0.778
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.778
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.778
Bra004910 Brassica rapa Bra004910 I 0.778
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.778
Bra040311 Brassica rapa Bra040311 I 0.778
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.778
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.778
Ca_20429 Cicer arietinum Ca_20429 I 0.775
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.775
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.771
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.769
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.769
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.769
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.769
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.768
Bo4g195520 Brassica oleracea Bo4g195520 I 0.768
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.768
Bo3g036000 Brassica oleracea Bo3g036000 I 0.763
PK23380.1 Cannabis sativa PK23380.1 I 0.761
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.758
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.758
LBD30 Arabidopsis thaliana AT4G00220 D 0.758
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.758
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.758
TCM_004106 Theobroma cacao TCM_004106 I 0.758
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.758
Si019578m.g Setaria italica Si019578m.g I 0.758
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.755
Ca_12213 Cicer arietinum Ca_12213 I 0.747
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.747
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.747
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.747
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.747
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.747
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.747
Bo9g002160 Brassica oleracea Bo9g002160 I 0.747
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.747
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.747
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.747
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.747
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.747
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.747
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.747
Bra037323 Brassica rapa Bra037323 I 0.747
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.747
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.740
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.740
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.737
LBD16 Arabidopsis thaliana AT2G42430 D 0.737
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.737
MDP0000145761 Malus domestica MDP0000145761 I 0.737
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.737
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.737
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.737
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.737
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.737
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.737
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.737
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.737
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.737
mgf006429m Mimulus guttatus mgf006429m I 0.737
Pm017935 Prunus mume Pm017935 I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.737
Bo4g016000 Brassica oleracea Bo4g016000 I 0.737
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.737
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.737
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.737
Bra004693 Brassica rapa Bra004693 I 0.737
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.737
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.737
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.737
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
Bra008514 Brassica rapa Bra008514 I 0.737
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.737
Bo4g191530 Brassica oleracea Bo4g191530 I 0.737
30174.m008897 Ricinus communis 30174.m008897 I 0.737
Cla006088 Citrullus lanatus Cla006088 I 0.737
Cla007069 Citrullus lanatus Cla007069 I 0.737
Pm020629 Prunus mume Pm020629 I 0.737
F775_22967 Aegilops tauschii F775_22967 I 0.736
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.736
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.736
F775_04528 Aegilops tauschii F775_04528 I 0.736
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.736
LBD19 Arabidopsis thaliana AT2G45410 D 0.736
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.736
PK00972.1 Cannabis sativa PK00972.1 I 0.733
Bo4g195510 Brassica oleracea Bo4g195510 I 0.730
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.727
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.727
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.727
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.727
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.727
Bra036436 Brassica rapa Bra036436 I 0.727
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.727
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.727
Bra016877 Brassica rapa Bra016877 I 0.727
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.727
MDP0000322059 Malus domestica MDP0000322059 I 0.727
MDP0000429067 Malus domestica MDP0000429067 I 0.727
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.727
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
TCM_005497 Theobroma cacao TCM_005497 I 0.727
Bo1g153580 Brassica oleracea Bo1g153580 I 0.727
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.727
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.727
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.727
Ca_19598 Cicer arietinum Ca_19598 I 0.727
Si015156m.g Setaria italica Si015156m.g I 0.725
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.725
Bra040312 Brassica rapa Bra040312 I 0.725
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.725
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.725
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.717
OB03G13890 Oryza brachyantha OB03G13890 I 0.717
OBART03G03830 Oryza barthii OBART03G03830 I 0.717
Bra000257 Brassica rapa Bra000257 I 0.717
Si040019m.g Setaria italica Si040019m.g I 0.717
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.717
mgf020735m Mimulus guttatus mgf020735m I 0.717
TCM_025849 Theobroma cacao TCM_025849 I 0.717
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.717
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.717
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.717
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.717
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.717
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.717
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.717
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.717
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.717
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.717
OS03G0149100 Oryza sativa OS03G0149100 I 0.717
Bo3g036030 Brassica oleracea Bo3g036030 I 0.717
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.717
29883.m002035 Ricinus communis 29883.m002035 I 0.717
Cla002965 Citrullus lanatus Cla002965 I 0.717
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.717
MDP0000131964 Malus domestica MDP0000131964 I 0.717
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.717
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.717
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.717
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.714
Bo8g092560 Brassica oleracea Bo8g092560 I 0.714
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.707
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.707
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.707
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.707
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.707
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.707
Bo9g002150 Brassica oleracea Bo9g002150 I 0.707
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.707
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.707
Bra037322 Brassica rapa Bra037322 I 0.707
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.707
MDP0000159122 Malus domestica MDP0000159122 I 0.706
TCM_004103 Theobroma cacao TCM_004103 I 0.705
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.704
Aquca_009_00958 Aquilegia coerulea Aquca_009_00958 I 0.704
cassava15468.m1 Manihot esculenta cassava15468.m1 I 0.702