OBART03G28270 (Oryza barthii)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OBART03G28270 T245543_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.789 0.789
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.779 0.779
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART03G28270.1 LOB 22 116

Links

Other LOB family TFs
Other Oryza barthii TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.979
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.979
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.979
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.979
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.979
Si037583m.g Setaria italica Si037583m.g I 0.968
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.958
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.958
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.958
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.958
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.947
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.947
OLONG_023571 Oryza longistaminata OLONG_023571 I 0.912
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.905
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.853
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.853
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.853
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.842
PK24688.1 Cannabis sativa PK24688.1 I 0.842
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.832
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.821
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.811
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.811
Cla009336 Citrullus lanatus Cla009336 I 0.811
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.811
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.811
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.811
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.811
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.811
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.811
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.800
mgf018189m Mimulus guttatus mgf018189m I 0.800
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.800
MDP0000121203 Malus domestica MDP0000121203 I 0.800
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.800
mgf026046m Mimulus guttatus mgf026046m I 0.800
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.800
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.800
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.800
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.800
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.800
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.789
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.789
PK11564.1 Cannabis sativa PK11564.1 I 0.789
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.789
Si011647m.g Setaria italica Si011647m.g I 0.789
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.789
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.789
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.789
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.789
Cla013678 Citrullus lanatus Cla013678 I 0.789
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.789
LBD4 Arabidopsis thaliana AT1G31320 D 0.789
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.789
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.789
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.789
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.789
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.789
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.789
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.789
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.789
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.789
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.789
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.789
TCM_042447 Theobroma cacao TCM_042447 I 0.789
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.789
Ca_06548 Cicer arietinum Ca_06548 I 0.789
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.788
TCM_029315 Theobroma cacao TCM_029315 I 0.788
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.788
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.779
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.779
Pm011040 Prunus mume Pm011040 I 0.779
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.779
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.779
Bra014907 Brassica rapa Bra014907 I 0.779
TCM_032557 Theobroma cacao TCM_032557 I 0.779
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.779
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.779
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.779
Si026864m.g Setaria italica Si026864m.g I 0.779
Cla007354 Citrullus lanatus Cla007354 I 0.779
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.779
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.779
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.779
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.779
MDP0000284409 Malus domestica MDP0000284409 I 0.779
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.779
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.779
mgf022958m Mimulus guttatus mgf022958m I 0.779
MDP0000268890 Malus domestica MDP0000268890 I 0.779
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.779
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.779
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.779
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.779
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.779
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.779
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.779
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.779
MDP0000265429 Malus domestica MDP0000265429 I 0.779
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.779
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.779
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.778
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.778
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.768
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.768
30169.m006340 Ricinus communis 30169.m006340 I 0.768
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.768
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.768
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.768
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.768
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.768
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.768
Ca_13575 Cicer arietinum Ca_13575 I 0.768
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.768
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.768
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.768
Pm018982 Prunus mume Pm018982 I 0.768
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.768
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.768
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.768
Bra018335 Brassica rapa Bra018335 I 0.768
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.768
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.768
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.768
MDP0000861160 Malus domestica MDP0000861160 I 0.768
Bo7g041000 Brassica oleracea Bo7g041000 I 0.768
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.768
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.768
Si024229m.g Setaria italica Si024229m.g I 0.768
Bo4g059700 Brassica oleracea Bo4g059700 I 0.768
LBD12 Arabidopsis thaliana AT2G30130 I 0.768
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.758
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.758
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.758
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.758
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.758
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.758
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.758
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.758
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.758
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.758
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.758
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.758
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.758
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.758
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.758
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.758
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.758
OB05G20740 Oryza brachyantha OB05G20740 I 0.758
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.758
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.758
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.758
OS05G0346800 Oryza sativa OS05G0346800 I 0.758
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.758
TCM_042212 Theobroma cacao TCM_042212 I 0.758
MDP0000194766 Malus domestica MDP0000194766 I 0.758
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.758
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.758
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.758
OBART05G12620 Oryza barthii OBART05G12620 I 0.758
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.758
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.758
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.747
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.747
Pm000193 Prunus mume Pm000193 I 0.747
MDP0000155138 Malus domestica MDP0000155138 I 0.747
Ca_12450 Cicer arietinum Ca_12450 I 0.747
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.747
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.747
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.747
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.747
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.747
Thhalv10017267m.g Eutrema salsugineum Thhalv10017267m.g I 0.747
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.747
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.747
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.747
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.747
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.747
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.747
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.747
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.747
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.747
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.737
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.737
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.737
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.737
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.737
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.737
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.737
Bo4g170770 Brassica oleracea Bo4g170770 I 0.737
Bra021612 Brassica rapa Bra021612 I 0.737
F775_08326 Aegilops tauschii F775_08326 I 0.737
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.737
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.737
mgf019461m Mimulus guttatus mgf019461m I 0.737
Cla005598 Citrullus lanatus Cla005598 I 0.737
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.737
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.737
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.737
Ca_13388 Cicer arietinum Ca_13388 I 0.737
29729.m002278 Ricinus communis 29729.m002278 I 0.737
Ca_08998 Cicer arietinum Ca_08998 I 0.737
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.727
Bra022780 Brassica rapa Bra022780 I 0.727
Bo3g024350 Brassica oleracea Bo3g024350 I 0.727
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.727
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.727
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.726
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.726
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.726
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.726
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.726
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.717
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.717
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.716
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.716
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.716
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.716
cassava2872.m1 Manihot esculenta cassava2872.m1 I 0.716
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.705
ORGLA12G0001500 Oryza glaberrima ORGLA12G0001500 I 0.705
ORUFI11G00360 Oryza rufipogon ORUFI11G00360 N 0.705
OGLUM12G00350 Oryza glumaepatula OGLUM12G00350 I 0.705
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.705
F775_25790 Aegilops tauschii F775_25790 I 0.705
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.705
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.705
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.705
MDP0000123013 Malus domestica MDP0000123013 I 0.705
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.705
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.705
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.705
MDP0000151784 Malus domestica MDP0000151784 I 0.705