OLONG_009404 (Oryza longistaminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OLONG_009404 T245597_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.747 0.747
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.734 0.734
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_009404-R1 LOB 30 109

Links

Other LOB family TFs
Other Oryza longistaminata TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29917.m001993 Ricinus communis 29917.m001993 I 0.734
29929.m004500 Ricinus communis 29929.m004500 I 0.734
30147.m013890 Ricinus communis 30147.m013890 I 0.759
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.810
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.709
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.747
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.759
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.734
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.722
Bo2g051420 Brassica oleracea Bo2g051420 I 0.734
Bo3g104760 Brassica oleracea Bo3g104760 I 0.747
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.747
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.734
Bra035860 Brassica rapa Bra035860 I 0.709
Bra038606 Brassica rapa Bra038606 I 0.747
Bra039733 Brassica rapa Bra039733 I 0.734
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.810
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.734
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.747
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.734
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.734
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.734
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.759
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.759
Ca_07463 Cicer arietinum Ca_07463 I 0.734
Ca_08824 Cicer arietinum Ca_08824 I 0.759
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.759
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.709
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.709
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.722
Cla003499 Citrullus lanatus Cla003499 I 0.734
Cla005851 Citrullus lanatus Cla005851 I 0.747
Cla017388 Citrullus lanatus Cla017388 I 0.734
Cla019510 Citrullus lanatus Cla019510 I 0.759
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.747
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.747
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.759
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.734
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.747
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.722
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.709
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.759
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.734
F775_25656 Aegilops tauschii F775_25656 I 0.797
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.722
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.734
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.772
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.759
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.772
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.709
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.759
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.722
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.722
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.759
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.709
LBD6 Arabidopsis thaliana AT1G65620 D 0.734
LOB Arabidopsis thaliana AT5G63090 D 0.747
LOB Vitis vinifera VIT_17s0000g09010 I 0.759
LOB Arabidopsis lyrata scaffold_802995.1 I 0.747
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.810
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.709
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.747
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.747
MDP0000130659 Malus domestica MDP0000130659 I 0.759
MDP0000133546 Malus domestica MDP0000133546 I 0.734
MDP0000254288 Malus domestica MDP0000254288 I 0.759
MDP0000273432 Malus domestica MDP0000273432 I 0.747
MDP0000643326 Malus domestica MDP0000643326 I 0.734
MDP0000848210 Malus domestica MDP0000848210 I 0.709
mgf014755m Mimulus guttatus mgf014755m I 0.747
mgf024603m Mimulus guttatus mgf024603m I 0.722
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.747
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.759
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.709
OB01G14220 Oryza brachyantha OB01G14220 I 0.810
OBART01G04470 Oryza barthii OBART01G04470 I 0.810
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.810
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.810
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.810
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.709
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.709
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.722
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.810
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.810
OS01G0169400 Oryza sativa OS01G0169400 I 0.810
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.810
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.709
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.810
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.734
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.709
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.709
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.747
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.709
PK21510.1 Cannabis sativa PK21510.1 I 0.709
PK26472.1 Cannabis sativa PK26472.1 I 0.722
Pm015649 Prunus mume Pm015649 I 0.722
Pm024312 Prunus mume Pm024312 I 0.759
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.722
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.722
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.722
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.759
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.759
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.722
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.759
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.759
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.722
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.722
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.747
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.722
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.810
Si002632m.g Setaria italica Si002632m.g I 0.810
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.709
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.734
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.722
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.722
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
TCM_012190 Theobroma cacao TCM_012190 I 0.759
TCM_016952 Theobroma cacao TCM_016952 I 0.709
TCM_024217 Theobroma cacao TCM_024217 I 0.734
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.747
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.734
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.797