CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OLONG_023571
(
Oryza longistaminata
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
OLONG_023571
T245609_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.754
0.754
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.719
0.719
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OLONG_023571-R1
LOB
3
59
DVVVAEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQLALAQA
Links
Other
LOB
family TFs
Other
Oryza longistaminata
TFs
162 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.912
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.912
OBART03G28270
Oryza barthii
OBART03G28270
I
0.912
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.912
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.912
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.912
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.895
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.895
OB03G35930
Oryza brachyantha
OB03G35930
N
0.895
OPUNC03G25820
Oryza punctata
OPUNC03G25820
I
0.895
Si037583m.g
Setaria italica
Si037583m.g
I
0.895
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.877
GRMZM2G079185
Zea mays
GRMZM2G079185
I
0.860
LPERR03G23450
Leersia perrieri
LPERR03G23450
I
0.860
OS03G0659700
Oryza sativa
OS03G0659700
I
0.825
GRMZM2G447176
Zea mays
GRMZM2G447176
I
0.807
Traes_4BS_E9E0C550B
Triticum aestivum
Traes_4BS_E9E0C550B
I
0.807
PK24688.1
Cannabis sativa
PK24688.1
I
0.807
TRIUR3_11841
Triticum urartu
TRIUR3_11841
I
0.807
Traes_4DS_DA077BB06
Triticum aestivum
Traes_4DS_DA077BB06
I
0.807
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.789
Traes_4AL_AD9C8CB77
Triticum aestivum
Traes_4AL_AD9C8CB77
I
0.789
Cla009336
Citrullus lanatus
Cla009336
I
0.772
POPTR_0005s10050
Populus trichocarpa
POPTR_0005s10050
I
0.769
POPTR_0003s14880
Populus trichocarpa
POPTR_0003s14880
I
0.754
Cucsa.236600
Cucumis sativus
Cucsa.236600
I
0.754
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.754
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.754
Gorai.011G051200
Gossypium raimondii
Gorai.011G051200
I
0.754
Lus10031285.g
Linum usitatissimum
Lus10031285.g
I
0.754
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.754
LBD4
Arabidopsis thaliana
AT1G31320
D
0.754
GSMUA_Achr2G13170_001
Musa acuminata
GSMUA_Achr2G13170_001
I
0.754
mgf026046m
Mimulus guttatus
mgf026046m
I
0.754
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.754
Lus10040638.g
Linum usitatissimum
Lus10040638.g
I
0.754
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.754
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.754
GSMUA_Achr7G00880_001
Musa acuminata
GSMUA_Achr7G00880_001
I
0.754
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.754
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.754
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.754
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.754
Pavir.J22399
Panicum virgatum
Pavir.J22399
I
0.737
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.737
Si024229m.g
Setaria italica
Si024229m.g
I
0.737
mgf022958m
Mimulus guttatus
mgf022958m
I
0.737
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.737
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.737
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.737
Gorai.010G195100
Gossypium raimondii
Gorai.010G195100
I
0.737
MDP0000121203
Malus domestica
MDP0000121203
I
0.737
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.737
mgf018189m
Mimulus guttatus
mgf018189m
I
0.737
AMTR_s00032p00142260
Amborella trichopoda
AMTR_s00032p00142260
I
0.737
Pm010668
Prunus mume
Pm010668
I
0.737
Pavir.Ca01985
Panicum virgatum
Pavir.Ca01985
I
0.737
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.737
Pavir.J21476
Panicum virgatum
Pavir.J21476
I
0.737
TCM_042447
Theobroma cacao
TCM_042447
I
0.737
Bra014907
Brassica rapa
Bra014907
I
0.737
GSMUA_Achr4G32000_001
Musa acuminata
GSMUA_Achr4G32000_001
I
0.737
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.737
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.737
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.737
OB05G20740
Oryza brachyantha
OB05G20740
I
0.719
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.719
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.719
MDP0000861160
Malus domestica
MDP0000861160
I
0.719
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.719
OBART05G12620
Oryza barthii
OBART05G12620
I
0.719
GLYMA02G43030
Glycine max
GLYMA02G43030
I
0.719
gw1.238.28.1
Physcomitrella patens
gw1.238.28.1
D
0.719
Sb05g000550
Sorghum bicolor
Sb05g000550
I
0.719
gw1.66.118.1
Physcomitrella patens
gw1.66.118.1
I
0.719
OMERI05G11330
Oryza meridionalis
OMERI05G11330
I
0.719
evm.TU.supercontig_19.133
Carica papaya
evm.TU.supercontig_19.133
I
0.719
OGLUM05G13250
Oryza glumaepatula
OGLUM05G13250
I
0.719
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.719
MTR_2g068760
Medicago truncatula
MTR_2g068760
I
0.719
LPERR05G10020
Leersia perrieri
LPERR05G10020
I
0.719
PK11564.1
Cannabis sativa
PK11564.1
I
0.719
MDP0000265429
Malus domestica
MDP0000265429
I
0.719
Lus10007525.g
Linum usitatissimum
Lus10007525.g
I
0.719
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.719
GLYMA15G41020
Glycine max
GLYMA15G41020
I
0.719
MDP0000268890
Malus domestica
MDP0000268890
I
0.719
Gorai.003G149600
Gossypium raimondii
Gorai.003G149600
I
0.719
gene21039-v1.0-hybrid
Fragaria vesca
gene21039-v1.0-hybrid
I
0.719
MDP0000284409
Malus domestica
MDP0000284409
I
0.719
gene28202-v1.0-hybrid
Fragaria vesca
gene28202-v1.0-hybrid
I
0.719
gene30046-v1.0-hybrid
Fragaria vesca
gene30046-v1.0-hybrid
I
0.719
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.719
evm.TU.supercontig_192.6
Carica papaya
evm.TU.supercontig_192.6
I
0.719
orange1.1g038565m.g
Citrus sinensis
orange1.1g038565m.g
I
0.719
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.719
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.719
GLYMA14G06140
Glycine max
GLYMA14G06140
I
0.719
PGSC0003DMG400030456
Solanum tuberosum
PGSC0003DMG400030456
I
0.719
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.719
VIT_13s0067g01880
Vitis vinifera
VIT_13s0067g01880
I
0.719
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.719
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.719
TCM_032557
Theobroma cacao
TCM_032557
I
0.719
PRUPE_ppa012275mg
Prunus persica
PRUPE_ppa012275mg
I
0.719
Si011647m.g
Setaria italica
Si011647m.g
I
0.719
Sb08g000575
Sorghum bicolor
Sb08g000575
I
0.719
Si026864m.g
Setaria italica
Si026864m.g
I
0.719
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.719
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.719
Solyc06g082310.2
Solanum lycopersicum
Solyc06g082310.2
I
0.719
Cucsa.144430
Cucumis sativus
Cucsa.144430
I
0.719
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.719
BGIOSGA018244
Oryza indica
BGIOSGA018244
I
0.719
Pavir.J18260
Panicum virgatum
Pavir.J18260
I
0.719
Pm011040
Prunus mume
Pm011040
I
0.719
ORGLA05G0108100
Oryza glaberrima
ORGLA05G0108100
I
0.719
OPUNC05G10670
Oryza punctata
OPUNC05G10670
I
0.719
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.719
ONIVA05G13090
Oryza nivara
ONIVA05G13090
I
0.719
Bo7g041000
Brassica oleracea
Bo7g041000
I
0.719
OS05G0346800
Oryza sativa
OS05G0346800
I
0.719
BGIOSGA018245
Oryza indica
BGIOSGA018245
I
0.719
Cla013678
Citrullus lanatus
Cla013678
I
0.719
Ca_13575
Cicer arietinum
Ca_13575
I
0.719
Cla007354
Citrullus lanatus
Cla007354
I
0.719
ORUFI05G13610
Oryza rufipogon
ORUFI05G13610
I
0.719
PK09808.1
Cannabis sativa
PK09808.1
I
0.702
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.702
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.702
LjSGA_079580.1.1
Lotus japonicus
LjSGA_079580.1.1
I
0.702
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.702
MDP0000194766
Malus domestica
MDP0000194766
I
0.702
Ca_06548
Cicer arietinum
Ca_06548
I
0.702
PGSC0003DMG400023939
Solanum tuberosum
PGSC0003DMG400023939
I
0.702
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.702
POPTR_0001s28840
Populus trichocarpa
POPTR_0001s28840
I
0.702
POPTR_0009s08060
Populus trichocarpa
POPTR_0009s08060
I
0.702
ASL5
Vitis vinifera
VIT_06s0004g07200
I
0.702
TCM_042212
Theobroma cacao
TCM_042212
I
0.702
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.702
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.702
GLYMA18G02780
Glycine max
GLYMA18G02780
I
0.702
GLYMA09G02510
Glycine max
GLYMA09G02510
I
0.702
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.702
LPERR12G00030
Leersia perrieri
LPERR12G00030
I
0.702
MTR_3g071590
Medicago truncatula
MTR_3g071590
I
0.702
Pm018982
Prunus mume
Pm018982
I
0.702
30169.m006340
Ricinus communis
30169.m006340
I
0.702
Gorai.004G234100
Gossypium raimondii
Gorai.004G234100
I
0.702
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.702
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.702
Lus10017431.g
Linum usitatissimum
Lus10017431.g
I
0.702
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.702
Eucgr.J00175
Eucalyptus grandis
Eucgr.J00175
I
0.702
Eucgr.E02016
Eucalyptus grandis
Eucgr.E02016
I
0.702
cassava26200.m1
Manihot esculenta
cassava26200.m1
I
0.702
cassava20471.m1
Manihot esculenta
cassava20471.m1
I
0.702
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.702
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.702
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.702
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.702