OLONG_023571 (Oryza longistaminata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OLONG_023571 T245609_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.754 0.754
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OLONG_023571-R1 LOB 3 59

Links

Other LOB family TFs
Other Oryza longistaminata TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.719
LBD4 Arabidopsis thaliana AT1G31320 D 0.754
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.719
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.702
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.719
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.737
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.719
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.754
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.754
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.702
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.702
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.719
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.719
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.719
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.719
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.737
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.702
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.719
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.719
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.754
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.719
mgf026046m Mimulus guttatus mgf026046m I 0.754
Cla009336 Citrullus lanatus Cla009336 I 0.772
Cla013678 Citrullus lanatus Cla013678 I 0.719
Pm010668 Prunus mume Pm010668 I 0.737
Pm011040 Prunus mume Pm011040 I 0.719
Pm018982 Prunus mume Pm018982 I 0.702
30169.m006340 Ricinus communis 30169.m006340 I 0.702
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.702
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.702
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.754
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.702
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.719
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.719
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.754
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.702
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.719
mgf018189m Mimulus guttatus mgf018189m I 0.737
mgf022958m Mimulus guttatus mgf022958m I 0.737
Cla007354 Citrullus lanatus Cla007354 I 0.719
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.702
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.737
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.737
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.719
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.895
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.895
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.737
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.719
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.719
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.789
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.702
PK24688.1 Cannabis sativa PK24688.1 I 0.807
PK11564.1 Cannabis sativa PK11564.1 I 0.719
PK09808.1 Cannabis sativa PK09808.1 I 0.702
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.754
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.719
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.702
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.719
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.702
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.737
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.754
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.702
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.719
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.702
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.754
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.737
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.754
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.754
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.702
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.754
MDP0000861160 Malus domestica MDP0000861160 I 0.719
MDP0000284409 Malus domestica MDP0000284409 I 0.719
MDP0000268890 Malus domestica MDP0000268890 I 0.719
MDP0000265429 Malus domestica MDP0000265429 I 0.719
MDP0000194766 Malus domestica MDP0000194766 I 0.702
MDP0000121203 Malus domestica MDP0000121203 I 0.737
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.754
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.702
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.702
Ca_13575 Cicer arietinum Ca_13575 I 0.719
AMTR_s00032p00142260 Amborella trichopoda AMTR_s00032p00142260 I 0.737
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.860
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.719
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.702
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.719
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.702
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.702
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.702
OB05G20740 Oryza brachyantha OB05G20740 I 0.719
OBART03G28270 Oryza barthii OBART03G28270 I 0.912
OBART05G12620 Oryza barthii OBART05G12620 I 0.719
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.912
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.719
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.912
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.719
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.912
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.719
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.895
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.754
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.737
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.754
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.912
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.719
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.719
Bo7g041000 Brassica oleracea Bo7g041000 I 0.719
Bra014907 Brassica rapa Bra014907 I 0.737
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.754
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.719
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.737
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.702
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.719
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.719
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.719
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.702
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.702
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.737
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.860
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.807
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.719
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.719
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.912
TCM_032557 Theobroma cacao TCM_032557 I 0.719
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.719
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.719
Si037583m.g Setaria italica Si037583m.g I 0.895
Si026864m.g Setaria italica Si026864m.g I 0.719
Si024229m.g Setaria italica Si024229m.g I 0.737
Si011647m.g Setaria italica Si011647m.g I 0.719
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.737
TCM_042212 Theobroma cacao TCM_042212 I 0.702
TCM_042447 Theobroma cacao TCM_042447 I 0.737
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.719
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.719
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.702
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.754
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.807
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.807
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.807
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.789
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.719
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.719
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.702
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.719
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.702
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.702
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.719
OS05G0346800 Oryza sativa OS05G0346800 I 0.719
OS03G0659700 Oryza sativa OS03G0659700 I 0.825
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.719
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.754
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.877
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.737
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.719
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.719
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.719
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.702
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.719
Ca_06548 Cicer arietinum Ca_06548 I 0.702
OB03G35930 Oryza brachyantha OB03G35930 N 0.895