OMERI05G04500 (Oryza meridionalis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 OMERI05G04500 T245632_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.838 0.838
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI05G04500.1 LOB 65 163

Links

Other LOB family TFs
Other Oryza meridionalis TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 1.000
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 1.000
OBART05G04570 Oryza barthii OBART05G04570 I 1.000
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 1.000
BGIOSGA018747 Oryza indica BGIOSGA018747 I 1.000
OS05G0165450 Oryza sativa OS05G0165450 I 1.000
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 1.000
OB05G14280 Oryza brachyantha OB05G14280 I 0.989
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.980
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.980
F775_52636 Aegilops tauschii F775_52636 I 0.980
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.980
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.980
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.973
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.970
Si012018m.g Setaria italica Si012018m.g I 0.970
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.960
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.960
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.960
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.949
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.949
PK21617.1 Cannabis sativa PK21617.1 I 0.913
LBD15 Arabidopsis thaliana AT2G40470 I 0.899
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.899
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.899
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.899
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.899
Bo3g034980 Brassica oleracea Bo3g034980 I 0.889
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
TCM_045438 Theobroma cacao TCM_045438 I 0.889
PK17217.1 Cannabis sativa PK17217.1 I 0.889
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.889
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.889
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.889
Bra000188 Brassica rapa Bra000188 I 0.889
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.889
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.889
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.889
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.889
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.879
29729.m002335 Ricinus communis 29729.m002335 I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.879
Cla007391 Citrullus lanatus Cla007391 I 0.879
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.879
Si004575m.g Setaria italica Si004575m.g I 0.879
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.879
OS01G0825000 Oryza sativa OS01G0825000 I 0.879
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.879
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.879
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.879
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.879
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.879
TCM_042262 Theobroma cacao TCM_042262 I 0.879
Bra004572 Brassica rapa Bra004572 I 0.879
Bo4g190210 Brassica oleracea Bo4g190210 I 0.879
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.879
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.879
OBART01G35680 Oryza barthii OBART01G35680 I 0.879
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.879
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.879
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.879
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.869
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.869
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.869
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.869
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.869
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.869
Ca_04126 Cicer arietinum Ca_04126 I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.869
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.869
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.869
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.869
OB01G44400 Oryza brachyantha OB01G44400 I 0.869
F775_25790 Aegilops tauschii F775_25790 I 0.869
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.869
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
Bra016992 Brassica rapa Bra016992 I 0.869
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.869
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.869
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.869
MDP0000167580 Malus domestica MDP0000167580 I 0.860
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.859
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.859
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.859
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.859
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.859
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.848
mgf011471m Mimulus guttatus mgf011471m I 0.848
Bra021627 Brassica rapa Bra021627 I 0.848
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.848
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.848
MDP0000278334 Malus domestica MDP0000278334 I 0.848
Bo4g172950 Brassica oleracea Bo4g172950 I 0.848
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.848
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.848
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.848
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.848
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.848
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.838
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.838
Bra018320 Brassica rapa Bra018320 I 0.838
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.838
Ca_12420 Cicer arietinum Ca_12420 I 0.838
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
Ca_15642 Cicer arietinum Ca_15642 I 0.838
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.838
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
LBD13 Arabidopsis thaliana AT2G30340 D 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.838
PK05388.1 Cannabis sativa PK05388.1 I 0.833
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.830
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.828
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.828
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.828
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.828
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
29957.m001411 Ricinus communis 29957.m001411 I 0.828
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.818
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.818
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.818
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.818
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Pm000277 Prunus mume Pm000277 I 0.818
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.818
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.818
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.808
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.808
Pm019028 Prunus mume Pm019028 I 0.800
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.800
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.798
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.778
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.778
PK03716.1 Cannabis sativa PK03716.1 I 0.765
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
mgf026046m Mimulus guttatus mgf026046m I 0.737
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.734
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
Si037583m.g Setaria italica Si037583m.g I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
PK11564.1 Cannabis sativa PK11564.1 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
Pm011040 Prunus mume Pm011040 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.707
Cla013678 Citrullus lanatus Cla013678 I 0.707
MDP0000284409 Malus domestica MDP0000284409 I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.707
MDP0000268890 Malus domestica MDP0000268890 I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703