ONIVA01G04930 (Oryza nivara)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 ONIVA01G04930 T245640_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.909 0.909
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.768 0.768
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.717 0.717
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA01G04930.1 LOB 30 128

Links

Other LOB family TFs
Other Oryza nivara TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.000
Gam1 Hordeum vulgare Q96464_HORVU D 0.000
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.000
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.000
MYB33 Arabidopsis thaliana AT5G06100 D 0.000
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.000
MYB101 Arabidopsis thaliana AT2G32460 D 0.000
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I 0.000
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.000
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I 0.000
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.000
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I 0.000
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.000
mgf025568m Mimulus guttatus mgf025568m I 0.000
mgf020500m Mimulus guttatus mgf020500m I 0.000
mgf019173m Mimulus guttatus mgf019173m I 0.000
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.000
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I 0.000
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.000
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.000
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.000
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.000
Carubv10025403m.g Capsella rubella Carubv10025403m.g I 0.000
Carubv10025227m.g Capsella rubella Carubv10025227m.g I 0.000
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.000
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.000
Cagra.9104s0001 Capsella grandiflora Cagra.9104s0001 I 0.000
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.000
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.000
mgf010934m Mimulus guttatus mgf010934m I 0.000
mgf002965m Mimulus guttatus mgf002965m I 0.000
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.000
Pm016605 Prunus mume Pm016605 I 0.000
Pm015094 Prunus mume Pm015094 I 0.000
Pm011812 Prunus mume Pm011812 I 0.000
Cla013880 Citrullus lanatus Cla013880 I 0.000
Cla007782 Citrullus lanatus Cla007782 I 0.000
Cla005406 Citrullus lanatus Cla005406 I 0.000
Ca_25013 Cicer arietinum Ca_25013 I 0.000
Ca_21739 Cicer arietinum Ca_21739 I 0.000
Ca_20081 Cicer arietinum Ca_20081 I 0.000
29686.m000890 Ricinus communis 29686.m000890 I 0.000
29785.m000932 Ricinus communis 29785.m000932 I 0.000
29823.m000215 Ricinus communis 29823.m000215 I 0.000
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I 0.000
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.000
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.000
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.000
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.000
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.000
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.000
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.000
cassava11031.m1 Manihot esculenta cassava11031.m1 I 0.000
Ca_15422 Cicer arietinum Ca_15422 I 0.000
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I 0.000
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I 0.000
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I 0.000
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.000
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.000
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.000
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I 0.000
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.000
MDP0000308617 Malus domestica MDP0000308617 I 0.000
MDP0000179306 Malus domestica MDP0000179306 I 0.000
MDP0000176798 Malus domestica MDP0000176798 I 0.000
MDP0000175835 Malus domestica MDP0000175835 I 0.000
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I 0.000
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.000
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.000
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.000
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.000
PK15478.1 Cannabis sativa PK15478.1 I 0.000
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.000
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I 0.000
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.000
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.000
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I 0.000
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.000
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I 0.000
MDP0000151688 Malus domestica MDP0000151688 I 0.000
MDP0000147309 Malus domestica MDP0000147309 I 0.000
Gorai.007G312400 Gossypium raimondii Gorai.007G312400 I 0.000
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I 0.000
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I 0.000
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I 0.000
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.000
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.000
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.000
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.000
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.000
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.000
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I 0.000
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.000
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.000
Lus10040063.g Linum usitatissimum Lus10040063.g I 0.000
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.000
Lus10035275.g Linum usitatissimum Lus10035275.g I 0.000
Lus10027189.g Linum usitatissimum Lus10027189.g I 0.000
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.000
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.000
Lus10021539.g Linum usitatissimum Lus10021539.g I 0.000
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.000
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I 0.000
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.000
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.000
Ca_07119 Cicer arietinum Ca_07119 I 0.000
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.000
GSMUA_Achr10G29280_001 Musa acuminata GSMUA_Achr10G29280_001 I 0.000
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.000
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.000
GLYMA15G35860 Glycine max GLYMA15G35860 I 0.000
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.000
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.000
GLYMA13G04031 Glycine max GLYMA13G04031 I 0.000
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.000
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.000
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.000
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.000
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.000
LPERR05G16930 Leersia perrieri LPERR05G16930 I 0.000
OBART06G20450 Oryza barthii OBART06G20450 I 0.000
OBART05G21120 Oryza barthii OBART05G21120 I 0.000
OBART01G34660 Oryza barthii OBART01G34660 I 0.000
OB01G43550 Oryza brachyantha OB01G43550 I 0.000
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.000
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.000
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.000
MTR_3g011610 Medicago truncatula MTR_3g011610 I 0.000
MTR_2g088170 Medicago truncatula MTR_2g088170 I 0.000
MTR_1g021230 Medicago truncatula MTR_1g021230 I 0.000
GLYMA06G47000 Glycine max GLYMA06G47000 I 0.000
GLYMA04G15150 Glycine max GLYMA04G15150 I 0.000
Bo9g119060 Brassica oleracea Bo9g119060 I 0.000
Bo5g136570 Brassica oleracea Bo5g136570 I 0.000
Bo4g178040 Brassica oleracea Bo4g178040 I 0.000
Bo4g076940 Brassica oleracea Bo4g076940 I 0.000
Bo4g046000 Brassica oleracea Bo4g046000 I 0.000
Bo3g026690 Brassica oleracea Bo3g026690 I 0.000
BGIOSGA017818 Oryza indica BGIOSGA017818 I 0.000
GAM1 Oryza indica BGIOSGA004670 I 0.000
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.000
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.000
Bra002938 Brassica rapa Bra002938 I 0.000
Bra005597 Brassica rapa Bra005597 I 0.000
Bra012038 Brassica rapa Bra012038 I 0.000
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.000
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I 0.000
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.000
F775_28392 Aegilops tauschii F775_28392 I 0.000
F775_08967 Aegilops tauschii F775_08967 I 0.000
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.000
Bra035547 Brassica rapa Bra035547 I 0.000
Bra034842 Brassica rapa Bra034842 I 0.000
Bra022888 Brassica rapa Bra022888 I 0.000
Bra021791 Brassica rapa Bra021791 I 0.000
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.000
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I 0.000
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.000
Si000907m.g Setaria italica Si000907m.g I 0.000
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.000
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.000
SELMODRAFT_38120 Selaginella moellendorffii SELMODRAFT_38120 I 0.000
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.000
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.000
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.000
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.000
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I 0.000
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.000
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.000
TCM_011907 Theobroma cacao TCM_011907 I 0.000
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.000
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.000
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I 0.000
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.000
TRIUR3_17275 Triticum urartu TRIUR3_17275 I 0.000
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.000
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I 0.000
TCM_044611 Theobroma cacao TCM_044611 I 0.000
TCM_041010 Theobroma cacao TCM_041010 I 0.000
TCM_030853 Theobroma cacao TCM_030853 I 0.000
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.000
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.000
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I 0.000
OPUNC06G18670 Oryza punctata OPUNC06G18670 I 0.000
OPUNC05G18800 Oryza punctata OPUNC05G18800 I 0.000
ONIVA06G24230 Oryza nivara ONIVA06G24230 I 0.000
ONIVA05G21800 Oryza nivara ONIVA05G21800 I 0.000
OMERI06G21070 Oryza meridionalis OMERI06G21070 I 0.000
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.000
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.000
OLONG_019401 Oryza longistaminata OLONG_019401 I 0.000
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I 0.000
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I 0.000
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I 0.000
GAMYB Oryza sativa OS01G0812000 I 0.000
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.000
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.000
MYB101 Populus trichocarpa POPTR_0002s21300 I 0.000
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.000
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.000
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.000
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.000
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.000
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.000
OS05G0490600 Oryza sativa OS05G0490600 I 0.000
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I 0.000