CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ORUFI01G46340
(
Oryza rufipogon
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
ORUFI01G46340
T245753_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.760
0.760
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.747
0.747
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ORUFI01G46340.1
LOB
6
80
PCASCKLLRRRCTKDCIFAPFFPADDPHKFAIVHKVFGASNVSKMLQELPAQQQGDAVSSLVYEVNDRMRDPVYG
Links
Other
LOB
family TFs
Other
Oryza rufipogon
TFs
226 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OMERI01G39870
Oryza meridionalis
OMERI01G39870
I
0.987
ORGLA01G0366500
Oryza glaberrima
ORGLA01G0366500
I
0.973
LPERR05G10020
Leersia perrieri
LPERR05G10020
I
0.960
BGIOSGA018245
Oryza indica
BGIOSGA018245
I
0.960
OB05G20740
Oryza brachyantha
OB05G20740
I
0.960
ONIVA05G13090
Oryza nivara
ONIVA05G13090
I
0.960
BGIOSGA018244
Oryza indica
BGIOSGA018244
I
0.960
OS05G0346800
Oryza sativa
OS05G0346800
I
0.960
OGLUM05G13250
Oryza glumaepatula
OGLUM05G13250
I
0.960
OPUNC05G10670
Oryza punctata
OPUNC05G10670
I
0.960
ORUFI05G13610
Oryza rufipogon
ORUFI05G13610
I
0.960
OMERI05G11330
Oryza meridionalis
OMERI05G11330
I
0.960
ONIVA08G12870
Oryza nivara
ONIVA08G12870
I
0.947
ORGLA05G0108100
Oryza glaberrima
ORGLA05G0108100
I
0.947
Si024229m.g
Setaria italica
Si024229m.g
I
0.947
OBART05G12620
Oryza barthii
OBART05G12620
I
0.947
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.947
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.933
Pavir.J21476
Panicum virgatum
Pavir.J21476
I
0.933
Pavir.Ca01985
Panicum virgatum
Pavir.Ca01985
I
0.933
Pavir.J22399
Panicum virgatum
Pavir.J22399
I
0.933
TRIUR3_27421
Triticum urartu
TRIUR3_27421
I
0.920
F775_24149
Aegilops tauschii
F775_24149
I
0.920
evm.TU.supercontig_19.133
Carica papaya
evm.TU.supercontig_19.133
I
0.907
Pm018982
Prunus mume
Pm018982
I
0.893
PDK_20s1810211g001
Phoenix dactylifera
PDK_20s1810211g001
I
0.893
MDP0000155138
Malus domestica
MDP0000155138
I
0.893
mgf018189m
Mimulus guttatus
mgf018189m
I
0.880
MDP0000265429
Malus domestica
MDP0000265429
I
0.880
gene28202-v1.0-hybrid
Fragaria vesca
gene28202-v1.0-hybrid
I
0.880
TCM_042447
Theobroma cacao
TCM_042447
I
0.880
Gorai.003G149600
Gossypium raimondii
Gorai.003G149600
I
0.880
PRUPE_ppa012504mg
Prunus persica
PRUPE_ppa012504mg
I
0.880
Cla007354
Citrullus lanatus
Cla007354
I
0.867
ASL5
Vitis vinifera
VIT_06s0004g07200
I
0.867
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.867
Ca_13388
Cicer arietinum
Ca_13388
I
0.867
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.867
Pavir.J18260
Panicum virgatum
Pavir.J18260
I
0.867
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.867
PRUPE_ppa012275mg
Prunus persica
PRUPE_ppa012275mg
I
0.867
MDP0000194766
Malus domestica
MDP0000194766
I
0.867
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.867
Solyc06g082310.2
Solanum lycopersicum
Solyc06g082310.2
I
0.867
BGIOSGA000185
Oryza indica
BGIOSGA000185
N
0.867
Cucsa.144430
Cucumis sativus
Cucsa.144430
I
0.867
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.867
Gorai.004G234100
Gossypium raimondii
Gorai.004G234100
I
0.867
Lus10031285.g
Linum usitatissimum
Lus10031285.g
I
0.867
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.867
GLYMA02G43030
Glycine max
GLYMA02G43030
I
0.867
PGSC0003DMG400030456
Solanum tuberosum
PGSC0003DMG400030456
I
0.867
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.853
Si026864m.g
Setaria italica
Si026864m.g
I
0.853
POPTR_0009s08060
Populus trichocarpa
POPTR_0009s08060
I
0.853
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.853
gene21039-v1.0-hybrid
Fragaria vesca
gene21039-v1.0-hybrid
I
0.853
TCM_042212
Theobroma cacao
TCM_042212
I
0.853
VIT_13s0067g01880
Vitis vinifera
VIT_13s0067g01880
I
0.853
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.853
MDP0000861160
Malus domestica
MDP0000861160
I
0.853
GLYMA14G06140
Glycine max
GLYMA14G06140
I
0.853
cassava26200.m1
Manihot esculenta
cassava26200.m1
I
0.853
GSMUA_Achr9G18030_001
Musa acuminata
GSMUA_Achr9G18030_001
I
0.853
GLYMA18G02780
Glycine max
GLYMA18G02780
I
0.853
PDK_20s1728161g001
Phoenix dactylifera
PDK_20s1728161g001
I
0.853
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.853
Bo4g059700
Brassica oleracea
Bo4g059700
I
0.840
Bostr.29246s0022
Boechera stricta
Bostr.29246s0022
I
0.840
MTR_3g071590
Medicago truncatula
MTR_3g071590
I
0.840
Carubv10025543m.g
Capsella rubella
Carubv10025543m.g
I
0.840
GSMUA_Achr5G29470_001
Musa acuminata
GSMUA_Achr5G29470_001
I
0.840
SapurV1A.0566s0080
Salix purpurea
SapurV1A.0566s0080
I
0.840
Bra018335
Brassica rapa
Bra018335
I
0.840
ASL5
Arabidopsis lyrata
fgenesh2_kg.4__983__AT2G30130.1
I
0.840
Eucgr.J00175
Eucalyptus grandis
Eucgr.J00175
I
0.840
PDK_20s1342451g001
Phoenix dactylifera
PDK_20s1342451g001
I
0.840
LBD12
Arabidopsis thaliana
AT2G30130
I
0.840
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.827
POPTR_0001s28840
Populus trichocarpa
POPTR_0001s28840
I
0.827
GLYMA11G29450
Glycine max
GLYMA11G29450
I
0.827
PGSC0003DMG400023939
Solanum tuberosum
PGSC0003DMG400023939
I
0.827
Cla013598
Citrullus lanatus
Cla013598
I
0.813
GSMUA_Achr3G10050_001
Musa acuminata
GSMUA_Achr3G10050_001
I
0.813
F775_08326
Aegilops tauschii
F775_08326
I
0.813
GRMZM2G025989
Zea mays
GRMZM2G025989
I
0.813
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.813
Traes_5BL_CE4CF3B5C
Triticum aestivum
Traes_5BL_CE4CF3B5C
I
0.813
chr6.CM0738.260.nd
Lotus japonicus
chr6.CM0738.260.nd
I
0.813
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.800
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.800
evm.TU.supercontig_192.6
Carica papaya
evm.TU.supercontig_192.6
I
0.800
TRIUR3_11082
Triticum urartu
TRIUR3_11082
I
0.800
Cla009336
Citrullus lanatus
Cla009336
I
0.800
Cla013678
Citrullus lanatus
Cla013678
I
0.800
cassava20471.m1
Manihot esculenta
cassava20471.m1
I
0.800
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.800
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.800
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.800
Lus10007525.g
Linum usitatissimum
Lus10007525.g
I
0.800
Gorai.011G051200
Gossypium raimondii
Gorai.011G051200
I
0.800
GSMUA_Achr8G02800_001
Musa acuminata
GSMUA_Achr8G02800_001
I
0.800
Lus10017431.g
Linum usitatissimum
Lus10017431.g
I
0.800
gene30046-v1.0-hybrid
Fragaria vesca
gene30046-v1.0-hybrid
I
0.800
MLOC_5148
Hordeum vulgare
MLOC_5148
I
0.800
Lus10040638.g
Linum usitatissimum
Lus10040638.g
I
0.800
PK11564.1
Cannabis sativa
PK11564.1
I
0.787
MDP0000121203
Malus domestica
MDP0000121203
I
0.787
PK24688.1
Cannabis sativa
PK24688.1
I
0.787
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.787
Ca_08998
Cicer arietinum
Ca_08998
I
0.787
GSMUA_Achr2G13170_001
Musa acuminata
GSMUA_Achr2G13170_001
I
0.787
mgf022958m
Mimulus guttatus
mgf022958m
I
0.787
mgf026046m
Mimulus guttatus
mgf026046m
I
0.787
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.787
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.787
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.787
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.787
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.787
MDP0000277239
Malus domestica
MDP0000277239
I
0.787
Cucsa.139480
Cucumis sativus
Cucsa.139480
N
0.787
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.787
Ca_06548
Cicer arietinum
Ca_06548
I
0.787
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.787
POPTR_0003s14880
Populus trichocarpa
POPTR_0003s14880
I
0.787
SELMODRAFT_49085
Selaginella moellendorffii
SELMODRAFT_49085
I
0.787
Solyc02g069440.2
Solanum lycopersicum
Solyc02g069440.2
I
0.787
Si011647m.g
Setaria italica
Si011647m.g
I
0.787
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.787
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.787
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.787
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.787
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.787
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.773
MDP0000284409
Malus domestica
MDP0000284409
I
0.773
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.773
BRADI4G44850
Brachypodium distachyon
BRADI4G44850
I
0.773
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.773
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.773
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.773
SELMODRAFT_49084
Selaginella moellendorffii
SELMODRAFT_49084
I
0.773
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.773
GLYMA09G02510
Glycine max
GLYMA09G02510
I
0.773
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.773
GRMZM2G079185
Zea mays
GRMZM2G079185
I
0.773
GSMUA_Achr4G32000_001
Musa acuminata
GSMUA_Achr4G32000_001
I
0.773
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.773
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.773
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.773
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.773
MTR_2g068760
Medicago truncatula
MTR_2g068760
I
0.773
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.773
Pm011040
Prunus mume
Pm011040
I
0.773
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.773
MDP0000268890
Malus domestica
MDP0000268890
I
0.773
30169.m006340
Ricinus communis
30169.m006340
I
0.773
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.760
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.760
Si037583m.g
Setaria italica
Si037583m.g
I
0.760
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.760
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.760
Bra014907
Brassica rapa
Bra014907
I
0.760
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.760
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.760
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.760
LPERR12G00030
Leersia perrieri
LPERR12G00030
I
0.760
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.760
GRMZM2G447176
Zea mays
GRMZM2G447176
I
0.760
SapurV1A.0284s0080
Salix purpurea
SapurV1A.0284s0080
I
0.760
TCM_032557
Theobroma cacao
TCM_032557
I
0.760
cassava2872.m1
Manihot esculenta
cassava2872.m1
I
0.760
Bo7g041000
Brassica oleracea
Bo7g041000
I
0.760
LBD4
Arabidopsis thaliana
AT1G31320
D
0.760
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.760
Cla005598
Citrullus lanatus
Cla005598
I
0.760
Ca_13575
Cicer arietinum
Ca_13575
I
0.760
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.760
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.747
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.747
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.747
GLYMA15G41020
Glycine max
GLYMA15G41020
I
0.747
orange1.1g038565m.g
Citrus sinensis
orange1.1g038565m.g
I
0.747
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.747
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.747
GRMZM5G873586
Zea mays
GRMZM5G873586
I
0.747
LPERR03G23450
Leersia perrieri
LPERR03G23450
I
0.747
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.747
Gorai.009G112900
Gossypium raimondii
Gorai.009G112900
I
0.747
PGSC0003DMG402023851
Solanum tuberosum
PGSC0003DMG402023851
I
0.747
Solyc12g100150.1
Solanum lycopersicum
Solyc12g100150.1
I
0.733
Thhalv10017267m.g
Eutrema salsugineum
Thhalv10017267m.g
I
0.733
BGIOSGA036857
Oryza indica
BGIOSGA036857
I
0.733
BGIOSGA034653
Oryza indica
BGIOSGA034653
I
0.733
OPUNC12G00430
Oryza punctata
OPUNC12G00430
I
0.733
Sb08g000575
Sorghum bicolor
Sb08g000575
I
0.733
ORGLA12G0001500
Oryza glaberrima
ORGLA12G0001500
I
0.733
ORGLA11G0005800
Oryza glaberrima
ORGLA11G0005800
I
0.733
OS11G0106900
Oryza sativa
OS11G0106900
I
0.733
OS12G0106200
Oryza sativa
OS12G0106200
I
0.733
OGLUM12G00350
Oryza glumaepatula
OGLUM12G00350
I
0.733
TRIUR3_11841
Triticum urartu
TRIUR3_11841
I
0.720
e_gw1.192.35.1
Physcomitrella patens
e_gw1.192.35.1
I
0.720
Traes_4BS_E9E0C550B
Triticum aestivum
Traes_4BS_E9E0C550B
I
0.720
OPUNC03G25820
Oryza punctata
OPUNC03G25820
I
0.720
Traes_4DS_DA077BB06
Triticum aestivum
Traes_4DS_DA077BB06
I
0.720
Traes_1DS_BB8508CC6
Triticum aestivum
Traes_1DS_BB8508CC6
I
0.707
MLOC_16076
Hordeum vulgare
MLOC_16076
I
0.707
MLOC_56075
Hordeum vulgare
MLOC_56075
I
0.707
Traes_1AS_43FB6A3CF
Triticum aestivum
Traes_1AS_43FB6A3CF
I
0.707
Traes_1BS_8F922CA93
Triticum aestivum
Traes_1BS_8F922CA93
I
0.707
F775_52636
Aegilops tauschii
F775_52636
I
0.707
F775_25790
Aegilops tauschii
F775_25790
I
0.707
AMTR_s00007p00227160
Amborella trichopoda
AMTR_s00007p00227160
I
0.707
AMTR_s00076p00127530
Amborella trichopoda
AMTR_s00076p00127530
N
0.707
BRADI2G34520
Brachypodium distachyon
BRADI2G34520
I
0.707
LBD3
Arabidopsis lyrata
Al_scaffold_0001_1711
I
0.707
Traes_4AL_AD9C8CB77
Triticum aestivum
Traes_4AL_AD9C8CB77
I
0.707
Ciclev10006208m.g
Citrus clementina
Ciclev10006208m.g
I
0.707
Eucgr.E02018
Eucalyptus grandis
Eucgr.E02018
N
0.707
Eucgr.E04355
Eucalyptus grandis
Eucgr.E04355
N
0.707
Cagra.0824s0026
Capsella grandiflora
Cagra.0824s0026
I
0.707
Bostr.7128s0261
Boechera stricta
Bostr.7128s0261
I
0.707
Traes_4BS_C1F4F41E9
Triticum aestivum
Traes_4BS_C1F4F41E9
I
0.707
Traes_4DS_72ABC3EE5
Triticum aestivum
Traes_4DS_72ABC3EE5
I
0.707
TRIUR3_34193
Triticum urartu
TRIUR3_34193
I
0.707
orange1.1g041989m.g
Citrus sinensis
orange1.1g041989m.g
I
0.707