PGSC0003DMG400006914 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400006914 T245813_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.848 0.848
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400017805 LOB 11 109
PGSC0003DMT400017806 LOB 11 109

Links

Other LOB family TFs
Other Solanum tuberosum TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.990
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.919
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.919
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.909
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.909
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.909
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.909
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.909
Cla017388 Citrullus lanatus Cla017388 I 0.909
29917.m001993 Ricinus communis 29917.m001993 I 0.909
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.909
PK26472.1 Cannabis sativa PK26472.1 I 0.899
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.899
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.899
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.899
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.899
Ca_24372 Cicer arietinum Ca_24372 I 0.899
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.899
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.899
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.899
Cla010600 Citrullus lanatus Cla010600 I 0.899
Pm015649 Prunus mume Pm015649 I 0.899
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.889
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.889
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.889
MDP0000848210 Malus domestica MDP0000848210 I 0.889
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.889
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.889
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.889
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.879
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.879
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.879
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.879
OB01G14220 Oryza brachyantha OB01G14220 I 0.879
TCM_016952 Theobroma cacao TCM_016952 I 0.879
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.879
Si002632m.g Setaria italica Si002632m.g I 0.879
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.879
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.869
OBART01G04470 Oryza barthii OBART01G04470 I 0.869
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.869
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.869
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.869
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.869
OS01G0169400 Oryza sativa OS01G0169400 I 0.869
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.869
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.859
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.859
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.859
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.859
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.848
Bo3g104760 Brassica oleracea Bo3g104760 I 0.848
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.848
LOB Arabidopsis thaliana AT5G63090 D 0.848
mgf003146m Mimulus guttatus mgf003146m I 0.848
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.848
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.848
MDP0000254288 Malus domestica MDP0000254288 I 0.848
MDP0000130659 Malus domestica MDP0000130659 I 0.848
30147.m013890 Ricinus communis 30147.m013890 I 0.848
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.848
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.848
TCM_012190 Theobroma cacao TCM_012190 I 0.848
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.848
Cla019510 Citrullus lanatus Cla019510 I 0.848
LOB Arabidopsis lyrata scaffold_802995.1 I 0.848
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.848
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.848
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.848
Bra038606 Brassica rapa Bra038606 I 0.848
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.848
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.848
LOB Vitis vinifera VIT_17s0000g09010 I 0.848
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.848
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.848
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.848
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.838
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.838
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.838
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.838
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.838
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.838
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.838
Bo9g017470 Brassica oleracea Bo9g017470 I 0.838
LBD25 Arabidopsis thaliana AT3G27650 I 0.838
Ca_08824 Cicer arietinum Ca_08824 I 0.838
Pm024312 Prunus mume Pm024312 I 0.838
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.838
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.838
mgf024603m Mimulus guttatus mgf024603m I 0.838
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.838
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.838
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.838
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.838
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.828
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.828
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.828
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.828
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.828
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.828
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.828
Bra039072 Brassica rapa Bra039072 I 0.818
Ca_07463 Cicer arietinum Ca_07463 I 0.818
Bra035860 Brassica rapa Bra035860 I 0.818
Bra025294 Brassica rapa Bra025294 I 0.818
Bo9g008330 Brassica oleracea Bo9g008330 I 0.818
Bo7g085860 Brassica oleracea Bo7g085860 I 0.818
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.818
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.818
PK21510.1 Cannabis sativa PK21510.1 I 0.818
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.818
Cla003499 Citrullus lanatus Cla003499 I 0.808
PK18922.1 Cannabis sativa PK18922.1 I 0.807
Bo2g144870 Brassica oleracea Bo2g144870 I 0.788
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.788
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.788
Bra033019 Brassica rapa Bra033019 I 0.788
mgf016361m Mimulus guttatus mgf016361m I 0.788
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.747
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.737
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.737
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.737
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.737
Cla005851 Citrullus lanatus Cla005851 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
MDP0000273432 Malus domestica MDP0000273432 I 0.737
PK29334.1 Cannabis sativa PK29334.1 I 0.734
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.727
Bra039733 Brassica rapa Bra039733 I 0.727
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.727
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.727
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.727
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.727
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.727
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.727
OB05G24560 Oryza brachyantha OB05G24560 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
Bo2g051420 Brassica oleracea Bo2g051420 I 0.727
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.727
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.727
LBD6 Arabidopsis thaliana AT1G65620 D 0.727
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.727
OS05G0417000 Oryza sativa OS05G0417000 I 0.727
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.727
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.727
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.727
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.727
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.727
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.718
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.717
Bra012112 Brassica rapa Bra012112 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.707
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.707
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.707
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.707
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.707
OBART01G39990 Oryza barthii OBART01G39990 I 0.707
OB01G48740 Oryza brachyantha OB01G48740 I 0.707
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.707
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.707
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.707
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.707
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.707
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
F775_20715 Aegilops tauschii F775_20715 I 0.707
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.707
LBD6 Oryza indica BGIOSGA004955 I 0.707
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.707
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.707
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.707
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.707
LBD6 Oryza sativa OS01G0889400 I 0.707
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.707
Ca_20200 Cicer arietinum Ca_20200 I 0.707
mgf004296m Mimulus guttatus mgf004296m I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.707
Si002599m.g Setaria italica Si002599m.g I 0.707
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.707
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.707
Si024114m.g Setaria italica Si024114m.g I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.707
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.707