PGSC0003DMG400012629 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400012629 T245820_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.879 0.879
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400032875 LOB 11 109
PGSC0003DMT400032877 LOB 11 109

Links

Other LOB family TFs
Other Solanum tuberosum TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.970
29917.m001993 Ricinus communis 29917.m001993 I 0.949
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.949
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.939
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.939
PK26472.1 Cannabis sativa PK26472.1 I 0.939
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.939
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.939
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.939
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.939
Pm015649 Prunus mume Pm015649 I 0.939
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.939
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.929
Cla017388 Citrullus lanatus Cla017388 I 0.929
Cla010600 Citrullus lanatus Cla010600 I 0.929
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.929
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.929
Ca_24372 Cicer arietinum Ca_24372 I 0.929
MDP0000848210 Malus domestica MDP0000848210 I 0.929
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.929
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.929
TCM_016952 Theobroma cacao TCM_016952 I 0.919
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.919
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.919
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.909
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.909
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.909
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.909
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.909
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.899
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.899
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.899
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.899
TCM_012190 Theobroma cacao TCM_012190 I 0.889
LOB Vitis vinifera VIT_17s0000g09010 I 0.889
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.889
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.889
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.889
MDP0000254288 Malus domestica MDP0000254288 I 0.889
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.889
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.889
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.889
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.889
Cla019510 Citrullus lanatus Cla019510 I 0.889
MDP0000130659 Malus domestica MDP0000130659 I 0.889
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.889
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.889
30147.m013890 Ricinus communis 30147.m013890 I 0.889
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.879
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.879
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.879
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.879
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.879
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.879
LOB Arabidopsis thaliana AT5G63090 D 0.879
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.879
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.879
Bo3g104760 Brassica oleracea Bo3g104760 I 0.879
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.879
LOB Arabidopsis lyrata scaffold_802995.1 I 0.879
Si002632m.g Setaria italica Si002632m.g I 0.879
Bra038606 Brassica rapa Bra038606 I 0.879
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.879
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.879
Ca_08824 Cicer arietinum Ca_08824 I 0.879
OB01G14220 Oryza brachyantha OB01G14220 I 0.879
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.879
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.879
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.879
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.879
Pm024312 Prunus mume Pm024312 I 0.879
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.879
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.879
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.879
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.879
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.879
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.869
OS01G0169400 Oryza sativa OS01G0169400 I 0.869
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.869
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.869
PK21510.1 Cannabis sativa PK21510.1 I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
Bo9g017470 Brassica oleracea Bo9g017470 I 0.869
mgf024603m Mimulus guttatus mgf024603m I 0.869
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.869
OBART01G04470 Oryza barthii OBART01G04470 I 0.869
mgf003146m Mimulus guttatus mgf003146m I 0.869
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.869
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.869
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.869
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.869
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.869
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.859
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.859
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.859
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.859
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.859
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.859
Ca_07463 Cicer arietinum Ca_07463 I 0.859
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.848
Bra035860 Brassica rapa Bra035860 I 0.848
mgf016361m Mimulus guttatus mgf016361m I 0.828
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.828
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.828
LBD25 Arabidopsis thaliana AT3G27650 I 0.828
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.828
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.828
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.818
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.818
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.818
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.818
Bo7g085860 Brassica oleracea Bo7g085860 I 0.808
Bo9g008330 Brassica oleracea Bo9g008330 I 0.808
Bra039072 Brassica rapa Bra039072 I 0.808
Cla003499 Citrullus lanatus Cla003499 I 0.808
Bra025294 Brassica rapa Bra025294 I 0.808
PK18922.1 Cannabis sativa PK18922.1 I 0.789
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.778
Bo2g144870 Brassica oleracea Bo2g144870 I 0.778
Bra033019 Brassica rapa Bra033019 I 0.778
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.747
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.741
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.727
mgf014755m Mimulus guttatus mgf014755m I 0.727
AS2 Vitis vinifera VIT_00s0340g00090 I 0.727
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.727
PK29334.1 Cannabis sativa PK29334.1 I 0.719
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
MDP0000273432 Malus domestica MDP0000273432 I 0.717
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
Ca_20200 Cicer arietinum Ca_20200 I 0.717
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.717
Cla005851 Citrullus lanatus Cla005851 I 0.717
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.717
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.717
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.717
Bra012112 Brassica rapa Bra012112 I 0.717
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.717
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.717
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.707
Bo2g051420 Brassica oleracea Bo2g051420 I 0.707
LBD6 Arabidopsis thaliana AT1G65620 D 0.707
Bra039733 Brassica rapa Bra039733 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.707
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.707
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.707
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.707
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
MDP0000643326 Malus domestica MDP0000643326 I 0.707
TCM_024217 Theobroma cacao TCM_024217 I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.707
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.701