PGSC0003DMG400018112 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400018112 T245826_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.939 0.939
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400046644 LOB 10 108

Links

Other LOB family TFs
Other Solanum tuberosum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.980
LOB Vitis vinifera VIT_17s0000g09010 I 0.970
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.960
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.960
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.960
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.960
Cla019510 Citrullus lanatus Cla019510 I 0.960
30147.m013890 Ricinus communis 30147.m013890 I 0.960
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.960
TCM_012190 Theobroma cacao TCM_012190 I 0.960
MDP0000130659 Malus domestica MDP0000130659 I 0.960
MDP0000254288 Malus domestica MDP0000254288 I 0.960
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.960
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.960
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.949
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.949
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.949
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.949
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.949
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.949
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.949
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.949
Ca_08824 Cicer arietinum Ca_08824 I 0.949
Pm024312 Prunus mume Pm024312 I 0.949
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.939
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.939
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.939
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.939
LOB Arabidopsis thaliana AT5G63090 D 0.939
Bo3g104760 Brassica oleracea Bo3g104760 I 0.939
LOB Arabidopsis lyrata scaffold_802995.1 I 0.939
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.939
Bra038606 Brassica rapa Bra038606 I 0.939
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.939
mgf024603m Mimulus guttatus mgf024603m I 0.939
Ca_07463 Cicer arietinum Ca_07463 I 0.929
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.929
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.929
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.929
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.929
Bo9g017470 Brassica oleracea Bo9g017470 I 0.929
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.929
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.919
Bra035860 Brassica rapa Bra035860 I 0.919
PK21510.1 Cannabis sativa PK21510.1 I 0.919
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.909
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.909
mgf016361m Mimulus guttatus mgf016361m I 0.909
OB01G14220 Oryza brachyantha OB01G14220 I 0.909
Si002632m.g Setaria italica Si002632m.g I 0.909
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.909
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.909
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.909
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.909
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.899
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.899
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.899
OS01G0169400 Oryza sativa OS01G0169400 I 0.899
29917.m001993 Ricinus communis 29917.m001993 I 0.899
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.899
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.899
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.899
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.899
OBART01G04470 Oryza barthii OBART01G04470 I 0.899
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.889
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.889
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.889
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.889
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.889
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.889
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.889
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.889
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.889
F775_25656 Aegilops tauschii F775_25656 I 0.889
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.889
Pm015649 Prunus mume Pm015649 I 0.889
PK26472.1 Cannabis sativa PK26472.1 I 0.889
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.879
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.879
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.879
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.879
TCM_016952 Theobroma cacao TCM_016952 I 0.869
MDP0000848210 Malus domestica MDP0000848210 I 0.869
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.869
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.869
Cla010600 Citrullus lanatus Cla010600 I 0.869
Cla017388 Citrullus lanatus Cla017388 I 0.869
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.869
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.869
Ca_24372 Cicer arietinum Ca_24372 I 0.869
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.869
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.869
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.869
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.859
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.859
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.859
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.859
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.859
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.848
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.848
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.848
Cla003499 Citrullus lanatus Cla003499 I 0.848
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.848
PK18922.1 Cannabis sativa PK18922.1 I 0.842
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.838
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.835
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.828
mgf003146m Mimulus guttatus mgf003146m I 0.818
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.818
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.808
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.808
PK17019.1 Cannabis sativa PK17019.1 I 0.794
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.788
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.788
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.788
Bra025294 Brassica rapa Bra025294 I 0.788
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.788
Bo7g085860 Brassica oleracea Bo7g085860 I 0.788
LBD25 Arabidopsis thaliana AT3G27650 I 0.788
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.788
F775_33210 Aegilops tauschii F775_33210 I 0.781
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.771
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.768
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.768
Bo9g008330 Brassica oleracea Bo9g008330 I 0.768
Bra039072 Brassica rapa Bra039072 I 0.768
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.758
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.758
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.758
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.758
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.758
mgf014755m Mimulus guttatus mgf014755m I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.758
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.758
Cla005851 Citrullus lanatus Cla005851 I 0.758
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.758
MDP0000273432 Malus domestica MDP0000273432 I 0.758
AS2 Vitis vinifera VIT_00s0340g00090 I 0.758
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.758
Ca_20200 Cicer arietinum Ca_20200 I 0.758
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.747
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.747
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.747
Bo2g144870 Brassica oleracea Bo2g144870 I 0.747
Bra033019 Brassica rapa Bra033019 I 0.747
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.747
Bo2g051420 Brassica oleracea Bo2g051420 I 0.747
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.747
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.747
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.747
MDP0000643326 Malus domestica MDP0000643326 I 0.747
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.747
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.747
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.747
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.747
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.747
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.747
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.747
TCM_024217 Theobroma cacao TCM_024217 I 0.747
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.747
LBD6 Arabidopsis thaliana AT1G65620 D 0.747
29929.m004500 Ricinus communis 29929.m004500 I 0.747
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.747
Bra039733 Brassica rapa Bra039733 I 0.747
OS05G0417000 Oryza sativa OS05G0417000 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
OB05G24560 Oryza brachyantha OB05G24560 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.727
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.727
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.727
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.727
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.727
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.725
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.717
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.717
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.717
Si002599m.g Setaria italica Si002599m.g I 0.717
OB01G48740 Oryza brachyantha OB01G48740 I 0.717
Si024114m.g Setaria italica Si024114m.g I 0.717
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.717
TCM_000560 Theobroma cacao TCM_000560 I 0.717
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.717
OBART01G39990 Oryza barthii OBART01G39990 I 0.717
LBD6 Oryza sativa OS01G0889400 I 0.717
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.717
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.717
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.717
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.717
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.717
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.717
LBD6 Oryza indica BGIOSGA004955 I 0.717
F775_20715 Aegilops tauschii F775_20715 I 0.717
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.717
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.717
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.717
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.717
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
Bo2g167820 Brassica oleracea Bo2g167820 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.707
mgf004296m Mimulus guttatus mgf004296m I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.707
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.707
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.707
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.707
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.707
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.707
Pm026450 Prunus mume Pm026450 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.707
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.701