PGSC0003DMG400020562 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400020562 T245828_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.818 0.818
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400052995 LOB 13 111

Links

Other LOB family TFs
Other Solanum tuberosum TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.970
PK21617.1 Cannabis sativa PK21617.1 I 0.935
TCM_045438 Theobroma cacao TCM_045438 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.909
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.909
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.909
Ca_15642 Cicer arietinum Ca_15642 I 0.899
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.899
TCM_042262 Theobroma cacao TCM_042262 I 0.899
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.899
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.889
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.889
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.889
PK17217.1 Cannabis sativa PK17217.1 I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.889
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.889
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.889
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.889
29729.m002335 Ricinus communis 29729.m002335 I 0.889
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.879
MDP0000278334 Malus domestica MDP0000278334 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.879
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.869
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.869
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.869
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.869
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
mgf011471m Mimulus guttatus mgf011471m I 0.859
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Bra000188 Brassica rapa Bra000188 I 0.859
Bo3g034980 Brassica oleracea Bo3g034980 I 0.859
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.859
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.859
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.859
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.859
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.859
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.859
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.848
Bra004572 Brassica rapa Bra004572 I 0.848
Ca_12420 Cicer arietinum Ca_12420 I 0.848
Bo4g190210 Brassica oleracea Bo4g190210 I 0.848
Bo4g012620 Brassica oleracea Bo4g012620 I 0.848
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.848
29957.m001411 Ricinus communis 29957.m001411 I 0.848
Cla007391 Citrullus lanatus Cla007391 I 0.848
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.848
MDP0000167580 Malus domestica MDP0000167580 I 0.840
OB05G14280 Oryza brachyantha OB05G14280 I 0.839
Bra016992 Brassica rapa Bra016992 I 0.838
Pm000277 Prunus mume Pm000277 I 0.838
Bra021627 Brassica rapa Bra021627 I 0.828
Si012018m.g Setaria italica Si012018m.g I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.822
Bra018320 Brassica rapa Bra018320 I 0.818
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
mgf020556m Mimulus guttatus mgf020556m I 0.818
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.818
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.818
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.818
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.818
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.818
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.818
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.818
OBART05G04570 Oryza barthii OBART05G04570 I 0.818
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.818
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.818
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.818
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.818
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.818
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.818
OS05G0165450 Oryza sativa OS05G0165450 I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.808
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.808
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.808
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.808
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.808
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.808
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.808
F775_25790 Aegilops tauschii F775_25790 I 0.808
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.798
OBART01G35680 Oryza barthii OBART01G35680 I 0.798
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.798
F775_52636 Aegilops tauschii F775_52636 I 0.798
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.798
Si004575m.g Setaria italica Si004575m.g I 0.798
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.798
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.798
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.798
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.798
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.798
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.798
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.798
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.798
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.798
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.798
OS01G0825000 Oryza sativa OS01G0825000 I 0.798
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.798
OB01G44400 Oryza brachyantha OB01G44400 I 0.788
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.788
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.788
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.788
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.788
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.788
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.788
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.778
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.778
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.768
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
PK18922.1 Cannabis sativa PK18922.1 I 0.737
PK03716.1 Cannabis sativa PK03716.1 I 0.735
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.722
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.717
F775_33210 Aegilops tauschii F775_33210 I 0.712
Bo4g190140 Brassica oleracea Bo4g190140 I 0.711
PK29334.1 Cannabis sativa PK29334.1 I 0.703