PGSC0003DMG400027372 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400027372 T245838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.744 0.744
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400070405 LOB 1 39

Links

Other LOB family TFs
Other Solanum tuberosum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.897
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.897
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.872
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.872
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.846
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.846
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.821
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.821
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.821
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.795
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.795
Ca_02507 Cicer arietinum Ca_02507 N 0.769
LjSGA_079940.1 Lotus japonicus LjSGA_079940.1 N 0.769
MDP0000265429 Malus domestica MDP0000265429 I 0.744
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.744
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.744
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.744
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.744
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.744
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.744
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.744
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.744
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.744
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.744
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.744
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.744
Si024229m.g Setaria italica Si024229m.g I 0.744
mgf018189m Mimulus guttatus mgf018189m I 0.744
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.718
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.718
OLONG_017777 Oryza longistaminata OLONG_017777 N 0.718
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.718
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.718
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.718
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.718
MDP0000121203 Malus domestica MDP0000121203 I 0.718
Ca_13388 Cicer arietinum Ca_13388 I 0.718
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.718
Si011647m.g Setaria italica Si011647m.g I 0.718
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.718
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.718