CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400027372
(
Solanum tuberosum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
PGSC0003DMG400027372
T245838_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.744
0.744
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400070405
LOB
1
39
MVYEANARLRDPVYGCAGSICQLQKQVSDLQAQLAKAQA
Links
Other
LOB
family TFs
Other
Solanum tuberosum
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc06g005090.2
Solanum lycopersicum
Solyc06g005090.2
I
0.897
PGSC0003DMG400025400
Solanum tuberosum
PGSC0003DMG400025400
I
0.897
Gorai.004G012800
Gossypium raimondii
Gorai.004G012800
I
0.872
evm.TU.contig_40341.1
Carica papaya
evm.TU.contig_40341.1
I
0.872
ONIVA05G01850
Oryza nivara
ONIVA05G01850
I
0.846
GLYMA12G07650
Glycine max
GLYMA12G07650
I
0.846
GSMUA_Achr3G17800_001
Musa acuminata
GSMUA_Achr3G17800_001
N
0.821
Lus10040373.g
Linum usitatissimum
Lus10040373.g
I
0.821
PDK_20s1595351g001
Phoenix dactylifera
PDK_20s1595351g001
N
0.821
Thhalv10008781m.g
Eutrema salsugineum
Thhalv10008781m.g
N
0.795
Solyc04g050010.1
Solanum lycopersicum
Solyc04g050010.1
N
0.795
Ca_02507
Cicer arietinum
Ca_02507
N
0.769
LjSGA_079940.1
Lotus japonicus
LjSGA_079940.1
N
0.769
MDP0000265429
Malus domestica
MDP0000265429
I
0.744
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.744
Pavir.Ib01336
Panicum virgatum
Pavir.Ib01336
N
0.744
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.744
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.744
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.744
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.744
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.744
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.744
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.744
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.744
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.744
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.744
Si024229m.g
Setaria italica
Si024229m.g
I
0.744
mgf018189m
Mimulus guttatus
mgf018189m
I
0.744
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.718
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.718
OLONG_017777
Oryza longistaminata
OLONG_017777
N
0.718
GLYMA11G29450
Glycine max
GLYMA11G29450
I
0.718
BRADI4G44850
Brachypodium distachyon
BRADI4G44850
I
0.718
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.718
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.718
MDP0000121203
Malus domestica
MDP0000121203
I
0.718
Ca_13388
Cicer arietinum
Ca_13388
I
0.718
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.718
Si011647m.g
Setaria italica
Si011647m.g
I
0.718
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.718
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.718