CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400029080
(
Solanum tuberosum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
PGSC0003DMG400029080
T245841_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.808
0.808
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.808
0.808
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.717
0.717
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400074783
LOB
20
118
PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADTANSLVYEANVRLRDPVYGCMGAISSLQQQVQALQAELNVIRA
PGSC0003DMT400074784
LOB
44
142
PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADTANSLVYEANVRLRDPVYGCMGAISSLQQQVQALQAELNVIRA
Links
Other
LOB
family TFs
Other
Solanum tuberosum
TFs
240 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc06g050430.2
Solanum lycopersicum
Solyc06g050430.2
I
1.000
TCM_045438
Theobroma cacao
TCM_045438
I
0.949
LBD15
Vitis vinifera
VIT_13s0067g02380
I
0.949
evm.TU.supercontig_19.92
Carica papaya
evm.TU.supercontig_19.92
I
0.949
Aquca_005_00169
Aquilegia coerulea
Aquca_005_00169
I
0.949
cassava15554.m1
Manihot esculenta
cassava15554.m1
I
0.949
Gorai.009G295000
Gossypium raimondii
Gorai.009G295000
I
0.949
gene21311-v1.0-hybrid
Fragaria vesca
gene21311-v1.0-hybrid
I
0.939
PRUPE_ppa011757mg
Prunus persica
PRUPE_ppa011757mg
I
0.939
Thhalv10017905m.g
Eutrema salsugineum
Thhalv10017905m.g
I
0.939
29729.m002335
Ricinus communis
29729.m002335
I
0.939
cassava20848.m1
Manihot esculenta
cassava20848.m1
I
0.939
PK21617.1
Cannabis sativa
PK21617.1
I
0.935
GLYMA04G39830
Glycine max
GLYMA04G39830
I
0.929
LBD15
Arabidopsis thaliana
AT2G40470
I
0.929
AMTR_s00007p00227160
Amborella trichopoda
AMTR_s00007p00227160
I
0.929
GLYMA06G15050
Glycine max
GLYMA06G15050
I
0.929
Ciclev10032684m.g
Citrus clementina
Ciclev10032684m.g
I
0.929
Bostr.23794s0013
Boechera stricta
Bostr.23794s0013
I
0.929
Cagra.1642s0010
Capsella grandiflora
Cagra.1642s0010
I
0.929
Carubv10024002m.g
Capsella rubella
Carubv10024002m.g
I
0.929
Eucgr.G03121
Eucalyptus grandis
Eucgr.G03121
I
0.929
chr1.CM0125.30.nd
Lotus japonicus
chr1.CM0125.30.nd
I
0.929
LBD15
Arabidopsis lyrata
fgenesh2_kg.4__2164__AT2G40470.1
I
0.929
PK17217.1
Cannabis sativa
PK17217.1
I
0.929
orange1.1g027307m.g
Citrus sinensis
orange1.1g027307m.g
I
0.929
MDP0000167580
Malus domestica
MDP0000167580
I
0.920
GLYMA14G38280
Glycine max
GLYMA14G38280
I
0.919
Ca_04126
Cicer arietinum
Ca_04126
I
0.919
Bra000188
Brassica rapa
Bra000188
I
0.919
Gorai.012G015900
Gossypium raimondii
Gorai.012G015900
I
0.919
Bo3g034980
Brassica oleracea
Bo3g034980
I
0.919
Bo4g190210
Brassica oleracea
Bo4g190210
I
0.909
chr2.CM1032.110.nc
Lotus japonicus
chr2.CM1032.110.nc
I
0.909
MTR_3g094690
Medicago truncatula
MTR_3g094690
I
0.909
Bo4g012620
Brassica oleracea
Bo4g012620
I
0.909
POPTR_0013s08040
Populus trichocarpa
POPTR_0013s08040
I
0.909
Cla007391
Citrullus lanatus
Cla007391
I
0.909
Ca_12420
Cicer arietinum
Ca_12420
I
0.909
MDP0000278334
Malus domestica
MDP0000278334
I
0.909
Bra004572
Brassica rapa
Bra004572
I
0.909
MTR_5g083960
Medicago truncatula
MTR_5g083960
I
0.909
Gorai.013G005900
Gossypium raimondii
Gorai.013G005900
I
0.909
Gorai.003G151800
Gossypium raimondii
Gorai.003G151800
I
0.899
Bra016992
Brassica rapa
Bra016992
I
0.899
GSMUA_Achr11G08330_001
Musa acuminata
GSMUA_Achr11G08330_001
I
0.899
TCM_042262
Theobroma cacao
TCM_042262
I
0.899
OB05G14280
Oryza brachyantha
OB05G14280
I
0.897
Solyc06g007390.2
Solanum lycopersicum
Solyc06g007390.2
I
0.889
GSMUA_AchrUn_randomG14060_001
Musa acuminata
GSMUA_AchrUn_randomG14060_001
I
0.889
GLYMA02G40080
Glycine max
GLYMA02G40080
I
0.889
Cucsa.144080
Cucumis sativus
Cucsa.144080
I
0.889
cassava31953.m1
Manihot esculenta
cassava31953.m1
I
0.889
POPTR_0013s15220
Populus trichocarpa
POPTR_0013s15220
I
0.879
PGSC0003DMG400020562
Solanum tuberosum
PGSC0003DMG400020562
I
0.879
Ca_15642
Cicer arietinum
Ca_15642
I
0.879
Solyc06g082430.1
Solanum lycopersicum
Solyc06g082430.1
I
0.879
GSMUA_Achr5G07460_001
Musa acuminata
GSMUA_Achr5G07460_001
I
0.879
SapurV1A.0222s0070
Salix purpurea
SapurV1A.0222s0070
I
0.879
evm.TU.supercontig_2.327
Carica papaya
evm.TU.supercontig_2.327
I
0.879
Pavir.J00291
Panicum virgatum
Pavir.J00291
I
0.879
Sb09g004940
Sorghum bicolor
Sb09g004940
I
0.879
Eucgr.B04019
Eucalyptus grandis
Eucgr.B04019
I
0.879
TRIUR3_18328
Triticum urartu
TRIUR3_18328
I
0.877
OS05G0165450
Oryza sativa
OS05G0165450
I
0.869
BGIOSGA018747
Oryza indica
BGIOSGA018747
I
0.869
ORUFI05G04770
Oryza rufipogon
ORUFI05G04770
I
0.869
Lus10024183.g
Linum usitatissimum
Lus10024183.g
I
0.869
gw1.156.75.1
Physcomitrella patens
gw1.156.75.1
I
0.869
PGSC0003DMG400030461
Solanum tuberosum
PGSC0003DMG400030461
I
0.869
Si012018m.g
Setaria italica
Si012018m.g
I
0.869
SapurV1A.0215s0070
Salix purpurea
SapurV1A.0215s0070
I
0.869
Pavir.Ca01098
Panicum virgatum
Pavir.Ca01098
I
0.869
orange1.1g028221m.g
Citrus sinensis
orange1.1g028221m.g
I
0.869
POPTR_0019s14790
Populus trichocarpa
POPTR_0019s14790
I
0.869
mgf011471m
Mimulus guttatus
mgf011471m
I
0.869
ORGLA05G0042200
Oryza glaberrima
ORGLA05G0042200
I
0.869
MTR_5g075020
Medicago truncatula
MTR_5g075020
I
0.869
OMERI05G04500
Oryza meridionalis
OMERI05G04500
I
0.869
OGLUM05G04450
Oryza glumaepatula
OGLUM05G04450
I
0.869
29957.m001411
Ricinus communis
29957.m001411
I
0.869
GRMZM5G868471
Zea mays
GRMZM5G868471
I
0.869
gw1.9.232.1
Physcomitrella patens
gw1.9.232.1
I
0.869
ONIVA05G04920
Oryza nivara
ONIVA05G04920
I
0.869
Ciclev10002348m.g
Citrus clementina
Ciclev10002348m.g
I
0.869
OBART05G04570
Oryza barthii
OBART05G04570
I
0.869
PDK_20s1387061g002
Phoenix dactylifera
PDK_20s1387061g002
I
0.863
GSMUA_Achr7G22200_001
Musa acuminata
GSMUA_Achr7G22200_001
I
0.859
Lus10009930.g
Linum usitatissimum
Lus10009930.g
I
0.859
PK05388.1
Cannabis sativa
PK05388.1
I
0.857
Pm019028
Prunus mume
Pm019028
I
0.855
evm.TU.supercontig_331.6
Carica papaya
evm.TU.supercontig_331.6
I
0.851
Cucsa.326100
Cucumis sativus
Cucsa.326100
I
0.848
mgf020556m
Mimulus guttatus
mgf020556m
I
0.848
Traes_1DS_BB8508CC6
Triticum aestivum
Traes_1DS_BB8508CC6
I
0.848
gene28137-v1.0-hybrid
Fragaria vesca
gene28137-v1.0-hybrid
I
0.848
Traes_1AS_43FB6A3CF
Triticum aestivum
Traes_1AS_43FB6A3CF
I
0.848
Traes_1BS_8F922CA93
Triticum aestivum
Traes_1BS_8F922CA93
I
0.848
MLOC_56075
Hordeum vulgare
MLOC_56075
I
0.848
F775_52636
Aegilops tauschii
F775_52636
I
0.848
LPERR05G04040
Leersia perrieri
LPERR05G04040
I
0.848
GRMZM2G092517
Zea mays
GRMZM2G092517
I
0.848
BGIOSGA004719
Oryza indica
BGIOSGA004719
I
0.838
ONIVA01G40640
Oryza nivara
ONIVA01G40640
I
0.838
BRADI2G34520
Brachypodium distachyon
BRADI2G34520
I
0.838
OS01G0825000
Oryza sativa
OS01G0825000
I
0.838
ORGLA01G0294900
Oryza glaberrima
ORGLA01G0294900
I
0.838
F775_25790
Aegilops tauschii
F775_25790
I
0.838
ORUFI01G39050
Oryza rufipogon
ORUFI01G39050
I
0.838
TRIUR3_34193
Triticum urartu
TRIUR3_34193
I
0.838
BRADI2G53690
Brachypodium distachyon
BRADI2G53690
I
0.838
OMERI01G32750
Oryza meridionalis
OMERI01G32750
I
0.838
OLONG_000658
Oryza longistaminata
OLONG_000658
I
0.838
OBART01G35680
Oryza barthii
OBART01G35680
I
0.838
PRUPE_ppa019397mg
Prunus persica
PRUPE_ppa019397mg
I
0.838
Si004575m.g
Setaria italica
Si004575m.g
I
0.838
Pavir.Eb03580
Panicum virgatum
Pavir.Eb03580
I
0.838
LPERR01G30700
Leersia perrieri
LPERR01G30700
I
0.838
MLOC_16076
Hordeum vulgare
MLOC_16076
I
0.838
OGLUM01G39690
Oryza glumaepatula
OGLUM01G39690
I
0.838
SELMODRAFT_26920
Selaginella moellendorffii
SELMODRAFT_26920
I
0.828
Pm000277
Prunus mume
Pm000277
I
0.828
Sb03g038410
Sorghum bicolor
Sb03g038410
I
0.828
OB01G44400
Oryza brachyantha
OB01G44400
I
0.828
SELMODRAFT_37169
Selaginella moellendorffii
SELMODRAFT_37169
I
0.828
TRAES3BF078900060CFD_g
Triticum aestivum
TRAES3BF078900060CFD_g
I
0.828
OPUNC01G34540
Oryza punctata
OPUNC01G34540
I
0.828
LjSGA_040320.1
Lotus japonicus
LjSGA_040320.1
I
0.824
LBD13
Vitis vinifera
VIT_06s0004g07790
I
0.818
Pavir.Ea03276
Panicum virgatum
Pavir.Ea03276
I
0.818
Bostr.24513s0205
Boechera stricta
Bostr.24513s0205
I
0.808
LBD13
Arabidopsis lyrata
fgenesh2_kg.4__1005__AT2G30340.1
I
0.808
Bra018320
Brassica rapa
Bra018320
I
0.808
Thhalv10017073m.g
Eutrema salsugineum
Thhalv10017073m.g
I
0.808
LBD13
Arabidopsis thaliana
AT2G30340
D
0.808
Bo4g172950
Brassica oleracea
Bo4g172950
I
0.808
Cagra.0567s0001
Capsella grandiflora
Cagra.0567s0001
I
0.808
Bra021627
Brassica rapa
Bra021627
I
0.808
Bo4g059520
Brassica oleracea
Bo4g059520
I
0.808
Lus10034208.g
Linum usitatissimum
Lus10034208.g
I
0.798
Lus10029061.g
Linum usitatissimum
Lus10029061.g
I
0.798
Carubv10024870m.g
Capsella rubella
Carubv10024870m.g
I
0.798
Bo4g190140
Brassica oleracea
Bo4g190140
I
0.789
PK03716.1
Cannabis sativa
PK03716.1
I
0.765
PDK_20s1537041g001
Phoenix dactylifera
PDK_20s1537041g001
N
0.763
OLONG_007328
Oryza longistaminata
OLONG_007328
I
0.758
Cla006731
Citrullus lanatus
Cla006731
I
0.745
MDP0000284409
Malus domestica
MDP0000284409
I
0.737
MDP0000268890
Malus domestica
MDP0000268890
I
0.737
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.737
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.737
mgf026046m
Mimulus guttatus
mgf026046m
I
0.737
Pm011040
Prunus mume
Pm011040
I
0.737
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.737
GRMZM2G025989
Zea mays
GRMZM2G025989
I
0.734
PK29334.1
Cannabis sativa
PK29334.1
I
0.734
PDK_20s1448121g001
Phoenix dactylifera
PDK_20s1448121g001
N
0.729
Si026864m.g
Setaria italica
Si026864m.g
I
0.727
Si037583m.g
Setaria italica
Si037583m.g
I
0.727
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.727
PK11564.1
Cannabis sativa
PK11564.1
I
0.727
TCM_032557
Theobroma cacao
TCM_032557
I
0.727
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.727
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.727
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.727
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.727
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.727
30169.m006340
Ricinus communis
30169.m006340
I
0.727
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.727
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.717
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.717
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.717
LBD4
Arabidopsis thaliana
AT1G31320
D
0.717
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.717
POPTR_0001s11610
Populus trichocarpa
POPTR_0001s11610
I
0.717
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.717
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.717
Pavir.J18260
Panicum virgatum
Pavir.J18260
I
0.717
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.717
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.717
Pavir.J13923
Panicum virgatum
Pavir.J13923
I
0.717
Pavir.J06256
Panicum virgatum
Pavir.J06256
I
0.717
MDP0000121203
Malus domestica
MDP0000121203
I
0.717
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.717
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.717
TCM_029315
Theobroma cacao
TCM_029315
I
0.717
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.717
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.717
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.717
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.717
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.717
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.717
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.717
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.717
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.717
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.717
SapurV1A.0094s0480
Salix purpurea
SapurV1A.0094s0480
I
0.717
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.717
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.717
Cla013678
Citrullus lanatus
Cla013678
I
0.717
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.717
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.717
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.717
gene30046-v1.0-hybrid
Fragaria vesca
gene30046-v1.0-hybrid
I
0.717
chr6.CM0738.260.nd
Lotus japonicus
chr6.CM0738.260.nd
I
0.717
Ca_12450
Cicer arietinum
Ca_12450
I
0.717
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.717
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.717
GRMZM2G079185
Zea mays
GRMZM2G079185
I
0.717
Ca_13575
Cicer arietinum
Ca_13575
I
0.717
Bo4g170770
Brassica oleracea
Bo4g170770
I
0.707
Bo4g059700
Brassica oleracea
Bo4g059700
I
0.707
PK24688.1
Cannabis sativa
PK24688.1
I
0.707
Bo3g024350
Brassica oleracea
Bo3g024350
I
0.707
LBD12
Arabidopsis thaliana
AT2G30130
I
0.707
SapurV1A.0284s0080
Salix purpurea
SapurV1A.0284s0080
I
0.707
Carubv10025543m.g
Capsella rubella
Carubv10025543m.g
I
0.707
cassava20471.m1
Manihot esculenta
cassava20471.m1
I
0.707
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.707
GSMUA_Achr4G32000_001
Musa acuminata
GSMUA_Achr4G32000_001
I
0.707
GRMZM2G447176
Zea mays
GRMZM2G447176
I
0.707
Ca_08998
Cicer arietinum
Ca_08998
I
0.707
Ca_06548
Cicer arietinum
Ca_06548
I
0.707
PRUPE_ppa012504mg
Prunus persica
PRUPE_ppa012504mg
I
0.707
POPTR_0010s19180
Populus trichocarpa
POPTR_0010s19180
I
0.707
POPTR_0003s14880
Populus trichocarpa
POPTR_0003s14880
I
0.707
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.707
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.707
Ciclev10032929m.g
Citrus clementina
Ciclev10032929m.g
I
0.707
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.707
Bra021612
Brassica rapa
Bra021612
I
0.707
Bra018335
Brassica rapa
Bra018335
I
0.707
Bra014907
Brassica rapa
Bra014907
I
0.707
Bra022780
Brassica rapa
Bra022780
I
0.707
ASL5
Arabidopsis lyrata
fgenesh2_kg.4__983__AT2G30130.1
I
0.707
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.707
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.707
orange1.1g036782m.g
Citrus sinensis
orange1.1g036782m.g
I
0.707
PK17019.1
Cannabis sativa
PK17019.1
I
0.706