POPTR_0047s00280 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0047s00280 T245910_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.821 0.821
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.821 0.821
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.821 0.821
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.769 0.769
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.769 0.769
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.718 0.718
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0047s00280.1 LOB 1 79

Links

Other LOB family TFs
Other Populus trichocarpa TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.897
29883.m002035 Ricinus communis 29883.m002035 I 0.885
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.885
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.885
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.885
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.872
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.872
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.872
Pm020629 Prunus mume Pm020629 I 0.872
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.872
LBD16 Vitis vinifera VIT_07s0005g03030 I 0.859
MDP0000145761 Malus domestica MDP0000145761 I 0.859
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.846
TCM_004106 Theobroma cacao TCM_004106 I 0.846
MDP0000131964 Malus domestica MDP0000131964 I 0.846
Cla006088 Citrullus lanatus Cla006088 I 0.846
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.833
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.833
Solyc09g066260.2 Solanum lycopersicum Solyc09g066260.2 I 0.833
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.833
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.833
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.821
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.821
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.821
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.821
PGSC0003DMG400009713 Solanum tuberosum PGSC0003DMG400009713 I 0.821
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.821
Bo4g016000 Brassica oleracea Bo4g016000 I 0.821
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.821
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.821
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.821
LBD16 Arabidopsis thaliana AT2G42430 D 0.821
Bo4g191530 Brassica oleracea Bo4g191530 I 0.821
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.821
Bra016877 Brassica rapa Bra016877 I 0.821
Ca_12213 Cicer arietinum Ca_12213 I 0.821
Bra004693 Brassica rapa Bra004693 I 0.821
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.808
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.808
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.795
Bo3g036030 Brassica oleracea Bo3g036030 I 0.795
Bra000257 Brassica rapa Bra000257 I 0.795
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.782
Aquca_017_00683 Aquilegia coerulea Aquca_017_00683 I 0.782
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.782
GSMUA_Achr5G13230_001 Musa acuminata GSMUA_Achr5G13230_001 I 0.782
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.782
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.782
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.782
TCM_005496 Theobroma cacao TCM_005496 I 0.782
Cla007068 Citrullus lanatus Cla007068 I 0.782
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.782
chr5.CM0494.160.nd Lotus japonicus chr5.CM0494.160.nd I 0.782
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.782
MDP0000254224 Malus domestica MDP0000254224 I 0.782
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.782
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.782
Eucgr.K03284 Eucalyptus grandis Eucgr.K03284 I 0.782
30174.m008898 Ricinus communis 30174.m008898 I 0.782
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.769
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.769
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.769
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.769
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.769
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.769
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.769
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.769
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.769
Lus10000707.g Linum usitatissimum Lus10000707.g I 0.769
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.769
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.769
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.769
OS03G0246900 Oryza sativa OS03G0246900 I 0.769
OS02G0820500 Oryza sativa OS02G0820500 I 0.769
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.769
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.769
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.769
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.769
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.769
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.769
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.769
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.769
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.769
Bra040311 Brassica rapa Bra040311 I 0.769
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.769
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.769
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.769
GSMUA_Achr1G01350_001 Musa acuminata GSMUA_Achr1G01350_001 I 0.769
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.769
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.769
Lus10033872.g Linum usitatissimum Lus10033872.g I 0.769
Bra004910 Brassica rapa Bra004910 I 0.769
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.769
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.769
OB03G20590 Oryza brachyantha OB03G20590 I 0.769
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.769
Bo4g024620 Brassica oleracea Bo4g024620 I 0.769
OB02G44330 Oryza brachyantha OB02G44330 I 0.769
LBD18 Arabidopsis thaliana AT2G45420 D 0.769
OBART03G10450 Oryza barthii OBART03G10450 I 0.769
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.756
Lus10014757.g Linum usitatissimum Lus10014757.g I 0.756
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.756
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.756
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.756
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.756
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.756
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.756
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.756
Bo4g195520 Brassica oleracea Bo4g195520 I 0.756
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.756
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.756
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.756
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.756
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.756
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.756
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.756
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.756
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.756
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.756
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.756
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.756
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.756
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.744
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.744
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.744
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.744
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.744
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.744
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.744
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.744
OBART03G03830 Oryza barthii OBART03G03830 I 0.744
30072.m000955 Ricinus communis 30072.m000955 I 0.744
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.744
OB10G12360 Oryza brachyantha OB10G12360 I 0.744
OB03G13890 Oryza brachyantha OB03G13890 I 0.744
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.744
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.744
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.744
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.744
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.744
Si019578m.g Setaria italica Si019578m.g I 0.744
Si040019m.g Setaria italica Si040019m.g I 0.744
PK23185.1 Cannabis sativa PK23185.1 I 0.744
GSMUA_Achr3G27340_001 Musa acuminata GSMUA_Achr3G27340_001 I 0.744
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.744
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.744
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.744
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.744
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.744
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.744
TCM_025849 Theobroma cacao TCM_025849 I 0.744
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.744
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.744
OS03G0149100 Oryza sativa OS03G0149100 I 0.744
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.744
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.731
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.731
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.731
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.731
MDP0000322059 Malus domestica MDP0000322059 I 0.731
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.731
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.731
OS10G0162600 Oryza sativa OS10G0162600 I 0.731
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.731
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.731
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.731
MTR_1g070220 Medicago truncatula MTR_1g070220 I 0.731
Pm028642 Prunus mume Pm028642 I 0.731
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.731
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.731
OBART02G37570 Oryza barthii OBART02G37570 I 0.731
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.731
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.731
Bo1g153580 Brassica oleracea Bo1g153580 I 0.731
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.731
LBD20 Arabidopsis thaliana AT3G03760 I 0.731
Bra036436 Brassica rapa Bra036436 I 0.731
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.731
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.731
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.731
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.731
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.731
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.731
Solyc06g083930.1 Solanum lycopersicum Solyc06g083930.1 I 0.731
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.731
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.731
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.731
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.731
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.731
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.731
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.731
LBD30 Arabidopsis thaliana AT4G00220 D 0.718
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.718
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.718
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.718
Bra037323 Brassica rapa Bra037323 I 0.718
Cla002965 Citrullus lanatus Cla002965 I 0.718
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.718
Bo9g002160 Brassica oleracea Bo9g002160 I 0.718
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.718
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.718
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.718
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.718
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.718
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.718
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.718
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.718
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.718
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.718
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.718
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.705
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.705
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.705
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.705
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.705
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.705
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.705
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.705
OB08G30680 Oryza brachyantha OB08G30680 I 0.705
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.705
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.705
PGSC0003DMG400020069 Solanum tuberosum PGSC0003DMG400020069 I 0.705
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.705
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.705
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.705
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.705
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.705
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.705
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.705
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.705
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.705
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.705
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.705
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.705
mgf020773m Mimulus guttatus mgf020773m I 0.705
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.705
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.705
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.705
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.705
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.705
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.705
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.705
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.705
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.705
Pm017935 Prunus mume Pm017935 I 0.705
Pm020628 Prunus mume Pm020628 I 0.705
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.705
28428.m000040 Ricinus communis 28428.m000040 I 0.705
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.705