Sb01g024400 (Sorghum bicolor)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Sb01g024400 T245957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.778 0.778
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.778 0.778
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.737 0.737
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.737 0.737
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.727 0.727
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.727 0.727
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.727 0.727
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.717 0.717
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g024400.1 LOB 34 145

Links

Other LOB family TFs
Other Sorghum bicolor TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.889
TCM_005496 Theobroma cacao TCM_005496 I 0.859
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.859
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.851
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.851
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.828
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.828
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.818
MDP0000254224 Malus domestica MDP0000254224 I 0.818
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.818
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.818
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.818
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.818
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.818
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.818
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.808
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.808
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.808
Cla007068 Citrullus lanatus Cla007068 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.808
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.808
Pm017936 Prunus mume Pm017936 I 0.808
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.808
30174.m008898 Ricinus communis 30174.m008898 I 0.808
OBART03G10450 Oryza barthii OBART03G10450 I 0.808
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.808
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.808
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.808
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.808
OS03G0246900 Oryza sativa OS03G0246900 I 0.808
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.808
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.808
OB03G20590 Oryza brachyantha OB03G20590 I 0.808
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.808
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.808
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.808
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.808
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.798
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.798
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.798
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.798
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.798
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.798
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.793
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.788
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.788
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.788
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.788
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.788
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.788
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.788
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
Bra040311 Brassica rapa Bra040311 I 0.788
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.788
Bo4g195520 Brassica oleracea Bo4g195520 I 0.778
Bo4g024620 Brassica oleracea Bo4g024620 I 0.778
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.778
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.778
LBD18 Arabidopsis thaliana AT2G45420 D 0.778
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.778
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.778
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.778
Pm017935 Prunus mume Pm017935 I 0.778
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.778
OB10G12360 Oryza brachyantha OB10G12360 I 0.778
Bra004910 Brassica rapa Bra004910 I 0.778
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.778
Ca_20429 Cicer arietinum Ca_20429 I 0.775
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.773
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.769
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.768
MDP0000429067 Malus domestica MDP0000429067 I 0.768
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.768
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.768
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.768
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.768
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.768
PK25573.1 Cannabis sativa PK25573.1 I 0.768
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.768
OS10G0162600 Oryza sativa OS10G0162600 I 0.768
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.768
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.768
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.768
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.766
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.759
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.759
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.758
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.758
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.758
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.758
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.758
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.758
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.758
Bo4g195510 Brassica oleracea Bo4g195510 I 0.753
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.753
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.747
Cla007069 Citrullus lanatus Cla007069 I 0.747
Ca_19598 Cicer arietinum Ca_19598 I 0.747
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.747
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.747
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.747
Bra037323 Brassica rapa Bra037323 I 0.747
Bo9g002160 Brassica oleracea Bo9g002160 I 0.747
Ca_12213 Cicer arietinum Ca_12213 I 0.747
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.747
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.747
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.747
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.747
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.747
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.747
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.747
Bo3g036000 Brassica oleracea Bo3g036000 I 0.742
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.737
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.737
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.737
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.737
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.737
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.737
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.737
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.737
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.737
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.737
30174.m008897 Ricinus communis 30174.m008897 I 0.737
LBD30 Arabidopsis thaliana AT4G00220 D 0.737
TCM_004106 Theobroma cacao TCM_004106 I 0.737
Bra008514 Brassica rapa Bra008514 I 0.737
Bo2g097560 Brassica oleracea Bo2g097560 I 0.737
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.737
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.731
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.727
LBD16 Arabidopsis thaliana AT2G42430 D 0.727
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.727
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.727
Bra004693 Brassica rapa Bra004693 I 0.727
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.727
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.727
Bo4g191530 Brassica oleracea Bo4g191530 I 0.727
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.727
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.727
Bo4g016000 Brassica oleracea Bo4g016000 I 0.727
LBD20 Arabidopsis thaliana AT3G03760 I 0.727
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.727
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.727
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.727
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.727
Cla002965 Citrullus lanatus Cla002965 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.727
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.727
Pm020629 Prunus mume Pm020629 I 0.727
Cla006088 Citrullus lanatus Cla006088 I 0.727
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.727
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.727
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.727
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.727
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.727
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.727
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.727
mgf006429m Mimulus guttatus mgf006429m I 0.727
Bra016877 Brassica rapa Bra016877 I 0.727
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.727
mgf020735m Mimulus guttatus mgf020735m I 0.727
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.723
Pm028642 Prunus mume Pm028642 I 0.717
LBD19 Arabidopsis thaliana AT2G45410 D 0.717
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.717
MDP0000322059 Malus domestica MDP0000322059 I 0.717
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
TCM_025849 Theobroma cacao TCM_025849 I 0.717
TCM_005497 Theobroma cacao TCM_005497 I 0.717
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.717
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.717
MDP0000145761 Malus domestica MDP0000145761 I 0.717
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.717
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.717
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.717
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.717
PK00972.1 Cannabis sativa PK00972.1 I 0.717
PK23185.1 Cannabis sativa PK23185.1 I 0.717
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.717
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.717
Bra036436 Brassica rapa Bra036436 I 0.717
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.717
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.717
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.717
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.717
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.709
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.707
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.707
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.707
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.707
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.707
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.707
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.707
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.707
Bra000257 Brassica rapa Bra000257 I 0.707
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.707
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.707
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.707
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.707
Cla021625 Citrullus lanatus Cla021625 I 0.707
Lus10024877.g Linum usitatissimum Lus10024877.g I 0.707
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.707
29883.m002035 Ricinus communis 29883.m002035 I 0.707
30072.m000955 Ricinus communis 30072.m000955 I 0.707
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.707
MDP0000131964 Malus domestica MDP0000131964 I 0.707
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.704