scaffold_403397.1 (Arabidopsis lyrata)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 scaffold_403397.1 T245996_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.852 0.852
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.852 0.852
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403397.1 LOB 2 83

Links

Other LOB family TFs
Other Arabidopsis lyrata TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.704
LBD19 Arabidopsis thaliana AT2G45410 D 0.852
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.864
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.716
Bo4g024610 Brassica oleracea Bo4g024610 I 0.778
Bra040312 Brassica rapa Bra040312 I 0.753
PK25573.1 Cannabis sativa PK25573.1 I 0.765
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.852
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.852
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.716
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.704
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.790
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.753
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.704
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.741
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.704
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.704
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.753
MDP0000429067 Malus domestica MDP0000429067 I 0.741
MDP0000254224 Malus domestica MDP0000254224 I 0.716
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.716
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.753
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.716
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.704
OBART03G10450 Oryza barthii OBART03G10450 I 0.704
OB03G20590 Oryza brachyantha OB03G20590 I 0.704
OB10G12360 Oryza brachyantha OB10G12360 I 0.704
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.704
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.704
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.704
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.704
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.704
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.704
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.704
OS03G0246900 Oryza sativa OS03G0246900 I 0.704
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.716
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.716
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.765
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.704
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.716
Pm017935 Prunus mume Pm017935 I 0.753
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.741
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.716
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.704
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.716
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.704
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.704
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.704
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.716