CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SELMODRAFT_48892
(
Selaginella moellendorffii
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
SELMODRAFT_48892
T246016_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.737
0.737
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFJ12057
LOB
3
101
PCAACKLLRRKCTRECVFAPYFSSSEPQKFAQVHKIFGASNVSKMLQELPVERRRDAVASIVYEANARIRDPVYGCLGAIFTLQQQIAQLRKQLSAAQS
Links
Other
LOB
family TFs
Other
Selaginella moellendorffii
TFs
101 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SELMODRAFT_59179
Selaginella moellendorffii
SELMODRAFT_59179
I
1.000
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.747
TCM_029315
Theobroma cacao
TCM_029315
I
0.737
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.737
Gorai.002G104500
Gossypium raimondii
Gorai.002G104500
I
0.737
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.737
POPTR_0001s11610
Populus trichocarpa
POPTR_0001s11610
I
0.737
gw1.238.28.1
Physcomitrella patens
gw1.238.28.1
D
0.737
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.737
gw1.66.118.1
Physcomitrella patens
gw1.66.118.1
I
0.737
PK24688.1
Cannabis sativa
PK24688.1
I
0.737
POPTR_0003s14880
Populus trichocarpa
POPTR_0003s14880
I
0.737
Gorai.010G170700
Gossypium raimondii
Gorai.010G170700
I
0.737
SapurV1A.0094s0480
Salix purpurea
SapurV1A.0094s0480
I
0.737
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.737
Gorai.011G051200
Gossypium raimondii
Gorai.011G051200
I
0.727
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.727
TCM_032557
Theobroma cacao
TCM_032557
I
0.727
Ca_12450
Cicer arietinum
Ca_12450
I
0.727
30169.m006340
Ricinus communis
30169.m006340
I
0.727
cassava20471.m1
Manihot esculenta
cassava20471.m1
I
0.727
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.727
cassava30732.valid.m1
Manihot esculenta
cassava30732.valid.m1
I
0.727
Pm011040
Prunus mume
Pm011040
I
0.727
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.727
Si026864m.g
Setaria italica
Si026864m.g
I
0.727
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.727
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.727
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.727
MDP0000121203
Malus domestica
MDP0000121203
I
0.727
MTR_5g083230
Medicago truncatula
MTR_5g083230
I
0.727
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.727
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.727
GLYMA08G17990
Glycine max
GLYMA08G17990
I
0.727
PK11564.1
Cannabis sativa
PK11564.1
I
0.727
MDP0000284409
Malus domestica
MDP0000284409
I
0.727
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.727
MDP0000268890
Malus domestica
MDP0000268890
I
0.727
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.727
PRUPE_ppa012253mg
Prunus persica
PRUPE_ppa012253mg
I
0.727
Lus10040638.g
Linum usitatissimum
Lus10040638.g
I
0.717
Lus10031769.g
Linum usitatissimum
Lus10031769.g
I
0.717
chr3.CM0176.110.nc
Lotus japonicus
chr3.CM0176.110.nc
I
0.717
SapurV1A.0284s0080
Salix purpurea
SapurV1A.0284s0080
I
0.717
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.717
Pavir.J18260
Panicum virgatum
Pavir.J18260
I
0.717
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.717
Pavir.J06256
Panicum virgatum
Pavir.J06256
I
0.717
Pavir.J13923
Panicum virgatum
Pavir.J13923
I
0.717
gene30046-v1.0-hybrid
Fragaria vesca
gene30046-v1.0-hybrid
I
0.717
Cucsa.118370
Cucumis sativus
Cucsa.118370
I
0.717
GSMUA_Achr9G18030_001
Musa acuminata
GSMUA_Achr9G18030_001
I
0.717
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.717
GLYMA14G06140
Glycine max
GLYMA14G06140
I
0.717
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.717
Solyc02g069440.2
Solanum lycopersicum
Solyc02g069440.2
I
0.717
SELMODRAFT_49084
Selaginella moellendorffii
SELMODRAFT_49084
I
0.717
SELMODRAFT_49085
Selaginella moellendorffii
SELMODRAFT_49085
I
0.717
PGSC0003DMG400008649
Solanum tuberosum
PGSC0003DMG400008649
I
0.717
GLYMA09G02510
Glycine max
GLYMA09G02510
I
0.717
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.717
cassava26200.m1
Manihot esculenta
cassava26200.m1
I
0.717
Cla013678
Citrullus lanatus
Cla013678
I
0.717
GLYMA02G43030
Glycine max
GLYMA02G43030
I
0.717
Cla009336
Citrullus lanatus
Cla009336
I
0.717
LBD4
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_1002773
I
0.707
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.707
POPTR_0008s07280
Populus trichocarpa
POPTR_0008s07280
I
0.707
PDK_20s1810211g001
Phoenix dactylifera
PDK_20s1810211g001
I
0.707
Bra014907
Brassica rapa
Bra014907
I
0.707
Thhalv10008917m.g
Eutrema salsugineum
Thhalv10008917m.g
I
0.707
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.707
GSMUA_Achr10G13050_001
Musa acuminata
GSMUA_Achr10G13050_001
I
0.707
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.707
GSMUA_Achr10G14880_001
Musa acuminata
GSMUA_Achr10G14880_001
I
0.707
GSMUA_Achr6G15660_001
Musa acuminata
GSMUA_Achr6G15660_001
I
0.707
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.707
SapurV1A.0673s0190
Salix purpurea
SapurV1A.0673s0190
I
0.707
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.707
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.707
Carubv10010462m.g
Capsella rubella
Carubv10010462m.g
I
0.707
Ca_13575
Cicer arietinum
Ca_13575
I
0.707
Ca_06548
Cicer arietinum
Ca_06548
I
0.707
Eucgr.E02016
Eucalyptus grandis
Eucgr.E02016
I
0.707
Cagra.1508s0061
Capsella grandiflora
Cagra.1508s0061
I
0.707
Bostr.15697s0446
Boechera stricta
Bostr.15697s0446
I
0.707
gw1.156.75.1
Physcomitrella patens
gw1.156.75.1
I
0.707
LBD4
Arabidopsis thaliana
AT1G31320
D
0.707
mgf019461m
Mimulus guttatus
mgf019461m
I
0.707
Eucgr.F04424
Eucalyptus grandis
Eucgr.F04424
I
0.707
evm.TU.supercontig_19.133
Carica papaya
evm.TU.supercontig_19.133
I
0.707
Gorai.003G149600
Gossypium raimondii
Gorai.003G149600
I
0.707
Si037583m.g
Setaria italica
Si037583m.g
I
0.707
Cucsa.236600
Cucumis sativus
Cucsa.236600
I
0.707
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.707
TCM_042447
Theobroma cacao
TCM_042447
I
0.707
ASL5
Vitis vinifera
VIT_06s0004g07200
I
0.707
evm.TU.supercontig_192.6
Carica papaya
evm.TU.supercontig_192.6
I
0.707
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.707
LBD3
Vitis vinifera
VIT_19s0027g01120
I
0.707
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.707