Solyc02g069440.2 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc02g069440.2 T246074_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.879 0.879
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g069440.2.1 LOB 11 109

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.980
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.909
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.899
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.899
Ca_06548 Cicer arietinum Ca_06548 I 0.899
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.899
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.899
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.899
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.899
MDP0000121203 Malus domestica MDP0000121203 I 0.899
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.889
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.889
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.889
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.889
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.889
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.889
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.889
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.889
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.889
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.889
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.889
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.889
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.889
TCM_029315 Theobroma cacao TCM_029315 I 0.889
PK17019.1 Cannabis sativa PK17019.1 I 0.882
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.879
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.879
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.879
Bra014907 Brassica rapa Bra014907 I 0.879
Cla009336 Citrullus lanatus Cla009336 I 0.879
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.879
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.879
LBD4 Arabidopsis thaliana AT1G31320 D 0.879
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.879
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.879
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.879
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.879
PK11564.1 Cannabis sativa PK11564.1 I 0.879
Cla013678 Citrullus lanatus Cla013678 I 0.879
MDP0000284409 Malus domestica MDP0000284409 I 0.879
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.879
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.879
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.879
MDP0000268890 Malus domestica MDP0000268890 I 0.879
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.879
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.879
30169.m006340 Ricinus communis 30169.m006340 I 0.879
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.879
Pm011040 Prunus mume Pm011040 I 0.879
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.879
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.869
TCM_032557 Theobroma cacao TCM_032557 I 0.869
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.869
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.869
PK24688.1 Cannabis sativa PK24688.1 I 0.869
Ca_13575 Cicer arietinum Ca_13575 I 0.869
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.869
mgf022958m Mimulus guttatus mgf022958m I 0.869
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.869
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.869
Bo7g041000 Brassica oleracea Bo7g041000 I 0.869
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.865
AMTR_s00032p00142260 Amborella trichopoda AMTR_s00032p00142260 I 0.860
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.859
mgf026046m Mimulus guttatus mgf026046m I 0.859
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.859
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.859
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.859
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.859
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.851
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.848
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.848
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.838
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.828
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.828
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.828
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.827
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.818
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.818
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.818
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.808
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.808
Cla005598 Citrullus lanatus Cla005598 I 0.808
Si037583m.g Setaria italica Si037583m.g I 0.808
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.808
PK21617.1 Cannabis sativa PK21617.1 I 0.804
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.798
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.798
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.798
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.798
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.798
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.798
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.798
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.798
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.798
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.798
Pm000193 Prunus mume Pm000193 I 0.798
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.798
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.798
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.798
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.798
MDP0000265429 Malus domestica MDP0000265429 I 0.798
mgf019461m Mimulus guttatus mgf019461m I 0.788
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.788
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.788
Pm018982 Prunus mume Pm018982 I 0.788
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.788
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.788
29729.m002278 Ricinus communis 29729.m002278 I 0.788
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.788
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.788
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.788
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.788
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.788
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.788
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.788
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.788
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.788
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.788
OS03G0659700 Oryza sativa OS03G0659700 I 0.787
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.787
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.780
mgf018189m Mimulus guttatus mgf018189m I 0.778
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.778
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.778
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.778
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.778
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.778
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.778
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.778
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.778
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.778
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.778
OB05G20740 Oryza brachyantha OB05G20740 I 0.778
TCM_042447 Theobroma cacao TCM_042447 I 0.778
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.778
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.778
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.778
MDP0000155138 Malus domestica MDP0000155138 I 0.778
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.778
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.778
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.778
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.778
OBART05G12620 Oryza barthii OBART05G12620 I 0.778
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.778
OS05G0346800 Oryza sativa OS05G0346800 I 0.778
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.778
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.778
MDP0000861160 Malus domestica MDP0000861160 I 0.778
Si024229m.g Setaria italica Si024229m.g I 0.778
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.778
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.778
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.778
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.778
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.778
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.778
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.774
F775_24149 Aegilops tauschii F775_24149 I 0.772
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.772
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.768
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.768
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.768
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.768
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.768
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.768
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.768
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.768
OBART03G28270 Oryza barthii OBART03G28270 I 0.768
Cla007354 Citrullus lanatus Cla007354 I 0.768
ORGLA01G0366500 Oryza glaberrima ORGLA01G0366500 I 0.768
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.768
MDP0000194766 Malus domestica MDP0000194766 I 0.768
Bo4g059700 Brassica oleracea Bo4g059700 I 0.768
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.768
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.768
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.768
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.768
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.768
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.768
Bra018335 Brassica rapa Bra018335 I 0.768
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.768
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.768
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.768
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.768
TCM_042212 Theobroma cacao TCM_042212 I 0.768
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.768
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.768
Ca_12450 Cicer arietinum Ca_12450 I 0.768
LBD12 Arabidopsis thaliana AT2G30130 I 0.768
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.766
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.758
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.758
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.758
Bra021612 Brassica rapa Bra021612 I 0.758
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.758
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.758
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.758
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.758
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.758
Bo4g170770 Brassica oleracea Bo4g170770 I 0.758
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.758
Bo5g021980 Brassica oleracea Bo5g021980 I 0.758
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.758
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.758
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.758
ONIVA08G12870 Oryza nivara ONIVA08G12870 I 0.756
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.747
Bo3g024350 Brassica oleracea Bo3g024350 I 0.747
Bra022780 Brassica rapa Bra022780 I 0.747
Bra026042 Brassica rapa Bra026042 I 0.747
OB05G14280 Oryza brachyantha OB05G14280 I 0.747
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.747
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.747
Si026864m.g Setaria italica Si026864m.g I 0.747
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.747
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.747
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.747
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.747
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.747
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.747
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.747
Ca_13388 Cicer arietinum Ca_13388 I 0.747
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.742
MDP0000167580 Malus domestica MDP0000167580 I 0.740
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.737
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.737
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.737
Ca_08998 Cicer arietinum Ca_08998 I 0.737
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.737
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.737
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.737
F775_08326 Aegilops tauschii F775_08326 I 0.737
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.737
Thhalv10017267m.g Eutrema salsugineum Thhalv10017267m.g I 0.734
PK09808.1 Cannabis sativa PK09808.1 I 0.732
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.727
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.727
MDP0000277239 Malus domestica MDP0000277239 I 0.727
GRMZM5G873586 Zea mays GRMZM5G873586 I 0.727
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.727
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.727
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.727
LBD3 Arabidopsis thaliana AT1G16530 I 0.727
F775_33210 Aegilops tauschii F775_33210 I 0.726
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.726
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.722
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.717
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.717
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.717
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.717
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.717
SELMODRAFT_59179 Selaginella moellendorffii SELMODRAFT_59179 I 0.717
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.717
SELMODRAFT_48892 Selaginella moellendorffii SELMODRAFT_48892 I 0.717
Bo8g105450 Brassica oleracea Bo8g105450 I 0.717
Bra026716 Brassica rapa Bra026716 I 0.707
F775_25790 Aegilops tauschii F775_25790 I 0.707
OB11G10200 Oryza brachyantha OB11G10200 I 0.707
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.707
Cla013598 Citrullus lanatus Cla013598 I 0.707
cassava2872.m1 Manihot esculenta cassava2872.m1 I 0.707
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.707
Si011647m.g Setaria italica Si011647m.g I 0.707
LPERR11G00440 Leersia perrieri LPERR11G00440 I 0.707
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.707
OB12G10480 Oryza brachyantha OB12G10480 I 0.707
PK18922.1 Cannabis sativa PK18922.1 I 0.702