Solyc02g086480.1 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc02g086480.1 T246077_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.859 0.859
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g086480.1.1 LOB 12 110

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.970
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.929
29917.m001993 Ricinus communis 29917.m001993 I 0.929
Pm015649 Prunus mume Pm015649 I 0.919
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.919
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.919
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.919
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.919
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.919
PK26472.1 Cannabis sativa PK26472.1 I 0.919
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.909
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.909
MDP0000848210 Malus domestica MDP0000848210 I 0.909
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.909
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.909
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.899
TCM_016952 Theobroma cacao TCM_016952 I 0.899
Cla010600 Citrullus lanatus Cla010600 I 0.899
Ca_24372 Cicer arietinum Ca_24372 I 0.899
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.899
Cla017388 Citrullus lanatus Cla017388 I 0.899
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.899
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.899
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.889
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.889
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.889
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.879
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.879
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.879
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.879
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.879
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.879
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.879
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.879
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.869
Cla019510 Citrullus lanatus Cla019510 I 0.869
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.869
30147.m013890 Ricinus communis 30147.m013890 I 0.869
LOB Vitis vinifera VIT_17s0000g09010 I 0.869
TCM_012190 Theobroma cacao TCM_012190 I 0.869
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.869
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.869
mgf003146m Mimulus guttatus mgf003146m I 0.869
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.869
MDP0000130659 Malus domestica MDP0000130659 I 0.869
MDP0000254288 Malus domestica MDP0000254288 I 0.869
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.869
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.869
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.869
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.869
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.869
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.859
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.859
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.859
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.859
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.859
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.859
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.859
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.859
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.859
mgf024603m Mimulus guttatus mgf024603m I 0.859
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.859
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.859
Pm024312 Prunus mume Pm024312 I 0.859
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.859
Ca_08824 Cicer arietinum Ca_08824 I 0.859
LOB Arabidopsis thaliana AT5G63090 D 0.859
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.859
Bra038606 Brassica rapa Bra038606 I 0.859
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.859
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.859
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.859
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.859
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.859
LOB Arabidopsis lyrata scaffold_802995.1 I 0.859
Si002632m.g Setaria italica Si002632m.g I 0.859
Bo3g104760 Brassica oleracea Bo3g104760 I 0.859
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.859
OB01G14220 Oryza brachyantha OB01G14220 I 0.859
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.859
OBART01G04470 Oryza barthii OBART01G04470 I 0.848
OS01G0169400 Oryza sativa OS01G0169400 I 0.848
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.848
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.848
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.848
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.848
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.848
PK21510.1 Cannabis sativa PK21510.1 I 0.848
F775_25656 Aegilops tauschii F775_25656 I 0.848
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.848
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.848
Bo9g017470 Brassica oleracea Bo9g017470 I 0.848
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.848
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.838
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.838
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.838
Bra035860 Brassica rapa Bra035860 I 0.838
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.838
Ca_07463 Cicer arietinum Ca_07463 I 0.838
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.838
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.828
mgf016361m Mimulus guttatus mgf016361m I 0.818
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.808
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.808
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.808
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.808
LBD25 Arabidopsis thaliana AT3G27650 I 0.808
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.798
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.798
Bo7g085860 Brassica oleracea Bo7g085860 I 0.798
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.798
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.798
Bra025294 Brassica rapa Bra025294 I 0.788
Bo9g008330 Brassica oleracea Bo9g008330 I 0.788
Cla003499 Citrullus lanatus Cla003499 I 0.788
Bra039072 Brassica rapa Bra039072 I 0.788
PK18922.1 Cannabis sativa PK18922.1 I 0.772
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.768
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.768
Bo2g144870 Brassica oleracea Bo2g144870 I 0.758
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
Bra033019 Brassica rapa Bra033019 I 0.758
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.741
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.737
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.732
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.727
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.717
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.717
AS2 Vitis vinifera VIT_00s0340g00090 I 0.717
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707
Bo7g064360 Brassica oleracea Bo7g064360 I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
Cla005851 Citrullus lanatus Cla005851 I 0.707
Ca_20200 Cicer arietinum Ca_20200 I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.707
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
Bra012112 Brassica rapa Bra012112 I 0.707