Solyc02g090410.2 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc02g090410.2 T246079_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.808 0.808
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g090410.2.1 LOB 11 109

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.980
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.919
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.919
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.899
Pm026450 Prunus mume Pm026450 I 0.879
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.879
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.879
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.879
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.879
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.879
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.879
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.869
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.869
PK18922.1 Cannabis sativa PK18922.1 I 0.860
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.859
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.859
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.859
Cla020438 Citrullus lanatus Cla020438 I 0.859
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.859
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.859
TCM_000560 Theobroma cacao TCM_000560 I 0.859
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.848
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.848
MDP0000310871 Malus domestica MDP0000310871 I 0.838
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.838
MDP0000562305 Malus domestica MDP0000562305 I 0.838
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.838
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.838
mgf004296m Mimulus guttatus mgf004296m I 0.838
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.838
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.828
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.828
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.828
LBD36 Arabidopsis thaliana AT5G66870 I 0.828
MDP0000777060 Malus domestica MDP0000777060 I 0.828
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.828
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.828
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.828
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.828
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.828
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.818
29676.m001633 Ricinus communis 29676.m001633 I 0.818
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.818
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.818
Bra012112 Brassica rapa Bra012112 I 0.818
Pm010483 Prunus mume Pm010483 I 0.818
Traes_4BS_C1F4F41E9 Triticum aestivum Traes_4BS_C1F4F41E9 I 0.818
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.818
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.818
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.818
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.818
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.818
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.818
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.818
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.818
Traes_4DS_72ABC3EE5 Triticum aestivum Traes_4DS_72ABC3EE5 I 0.818
Bo7g064360 Brassica oleracea Bo7g064360 I 0.818
Traes_4AL_C060BF9F6 Triticum aestivum Traes_4AL_C060BF9F6 I 0.808
Bra039733 Brassica rapa Bra039733 I 0.808
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.808
TCM_024217 Theobroma cacao TCM_024217 I 0.808
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.808
Bo2g167820 Brassica oleracea Bo2g167820 I 0.808
29929.m004500 Ricinus communis 29929.m004500 I 0.808
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.808
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.808
MDP0000197526 Malus domestica MDP0000197526 I 0.808
Lus10005313.g Linum usitatissimum Lus10005313.g I 0.808
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.808
Bo2g051420 Brassica oleracea Bo2g051420 I 0.808
MDP0000273432 Malus domestica MDP0000273432 I 0.808
MDP0000643326 Malus domestica MDP0000643326 I 0.808
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.808
LBD6 Arabidopsis thaliana AT1G65620 D 0.808
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.808
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.808
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.808
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.808
mgf014755m Mimulus guttatus mgf014755m I 0.808
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.808
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.808
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.808
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.798
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.798
Ca_02125 Cicer arietinum Ca_02125 I 0.798
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.798
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.798
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.798
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.798
AS2 Vitis vinifera VIT_00s0340g00090 I 0.798
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.798
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.798
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.798
Ca_11161 Cicer arietinum Ca_11161 I 0.788
Cla005851 Citrullus lanatus Cla005851 I 0.788
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.788
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.788
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.788
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.788
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.788
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.788
Si036905m.g Setaria italica Si036905m.g I 0.788
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.788
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.778
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.778
ORUFI03G26840 Oryza rufipogon ORUFI03G26840 I 0.778
BGIOSGA013119 Oryza indica BGIOSGA013119 I 0.778
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.778
ORGLA03G0240600 Oryza glaberrima ORGLA03G0240600 I 0.778
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.778
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.778
ONIVA11G15310 Oryza nivara ONIVA11G15310 I 0.778
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.778
OGLUM03G26820 Oryza glumaepatula OGLUM03G26820 I 0.778
F775_21760 Aegilops tauschii F775_21760 I 0.778
Ca_02124 Cicer arietinum Ca_02124 I 0.778
OS03G0612400 Oryza sativa OS03G0612400 I 0.778
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.778
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.778
Ca_20200 Cicer arietinum Ca_20200 I 0.778
Sb01g014650 Sorghum bicolor Sb01g014650 I 0.778
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.768
OB05G24560 Oryza brachyantha OB05G24560 I 0.768
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.768
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.768
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.768
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.768
OS05G0417000 Oryza sativa OS05G0417000 I 0.768
OB03G34080 Oryza brachyantha OB03G34080 I 0.758
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.758
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.758
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.758
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.758
Si002599m.g Setaria italica Si002599m.g I 0.758
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.758
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.758
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.758
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.758
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.758
F775_20715 Aegilops tauschii F775_20715 I 0.747
OBART01G39990 Oryza barthii OBART01G39990 I 0.747
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.747
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.747
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.747
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.747
LBD6 Oryza indica BGIOSGA004955 I 0.747
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.747
OB01G48740 Oryza brachyantha OB01G48740 I 0.747
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.747
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.747
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.747
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.747
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.747
LBD6 Oryza sativa OS01G0889400 I 0.747
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.747
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.747
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.747
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.747
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.747
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.747
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.747
Bo9g021590 Brassica oleracea Bo9g021590 N 0.737
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.737
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.737
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.737
Si024114m.g Setaria italica Si024114m.g I 0.737
Bo4g151770 Brassica oleracea Bo4g151770 I 0.737
Bra032153 Brassica rapa Bra032153 I 0.737
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.737
PK29334.1 Cannabis sativa PK29334.1 I 0.734
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.727
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.727
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.727
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.727
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.727
LBD10 Arabidopsis thaliana AT2G23660 I 0.727
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.717
Lus10009337.g Linum usitatissimum Lus10009337.g I 0.717
Bra037142 Brassica rapa Bra037142 N 0.717
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.717
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.717
Bo9g017470 Brassica oleracea Bo9g017470 I 0.717
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.717
Lus10019633.g Linum usitatissimum Lus10019633.g I 0.717
LOB Arabidopsis lyrata scaffold_802995.1 I 0.707
Si002632m.g Setaria italica Si002632m.g I 0.707
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.707
MDP0000254288 Malus domestica MDP0000254288 I 0.707
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.707
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.707
LOB Arabidopsis thaliana AT5G63090 D 0.707
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.707
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.707
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.707
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.707
F775_25656 Aegilops tauschii F775_25656 I 0.707
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.707
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.707
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.707
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.707
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.707
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.707
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.707
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.707
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.707
mgf024603m Mimulus guttatus mgf024603m I 0.707
OBART01G04470 Oryza barthii OBART01G04470 I 0.707
mgf003146m Mimulus guttatus mgf003146m I 0.707
Pm024312 Prunus mume Pm024312 I 0.707
Bo3g104760 Brassica oleracea Bo3g104760 I 0.707
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.707
Cla019510 Citrullus lanatus Cla019510 I 0.707
Bra038606 Brassica rapa Bra038606 I 0.707
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.707
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.707
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.707
30147.m013890 Ricinus communis 30147.m013890 I 0.707
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.707
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.707
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.707
Ca_08824 Cicer arietinum Ca_08824 I 0.707
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.707
TCM_012190 Theobroma cacao TCM_012190 I 0.707
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.707
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.707
OS01G0169400 Oryza sativa OS01G0169400 I 0.707
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.707
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.707
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.707
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.707
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.707
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.707
OB01G14220 Oryza brachyantha OB01G14220 I 0.707
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.707
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.707
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.707
LOB Vitis vinifera VIT_17s0000g09010 I 0.707
MDP0000130659 Malus domestica MDP0000130659 I 0.707