Solyc06g007390.2 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc06g007390.2 T246091_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.818 0.818
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.818 0.818
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g007390.2.1 LOB 52 150

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.970
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.919
TCM_045438 Theobroma cacao TCM_045438 I 0.919
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.919
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.919
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.919
TCM_042262 Theobroma cacao TCM_042262 I 0.909
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.909
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.909
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.909
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.899
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.899
PK17217.1 Cannabis sativa PK17217.1 I 0.899
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.899
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.899
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.899
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.899
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.899
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.899
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.899
29729.m002335 Ricinus communis 29729.m002335 I 0.899
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.899
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.899
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.899
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.889
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.889
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.889
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.889
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.889
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.889
Ca_15642 Cicer arietinum Ca_15642 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.879
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.879
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.879
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.879
Bra000188 Brassica rapa Bra000188 I 0.879
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.879
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.879
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.879
mgf011471m Mimulus guttatus mgf011471m I 0.879
LBD15 Arabidopsis thaliana AT2G40470 I 0.879
Bo3g034980 Brassica oleracea Bo3g034980 I 0.879
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.879
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.879
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
MDP0000278334 Malus domestica MDP0000278334 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
Ca_12420 Cicer arietinum Ca_12420 I 0.869
Ca_04126 Cicer arietinum Ca_04126 I 0.869
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.869
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.869
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
Cla007391 Citrullus lanatus Cla007391 I 0.859
29957.m001411 Ricinus communis 29957.m001411 I 0.859
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.859
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.859
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.848
Pm000277 Prunus mume Pm000277 I 0.848
Bra016992 Brassica rapa Bra016992 I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.828
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.828
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.828
OBART05G04570 Oryza barthii OBART05G04570 I 0.828
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.828
Bra021627 Brassica rapa Bra021627 I 0.828
mgf020556m Mimulus guttatus mgf020556m I 0.828
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.828
OS05G0165450 Oryza sativa OS05G0165450 I 0.828
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.828
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.818
LBD13 Arabidopsis thaliana AT2G30340 D 0.818
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.818
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.818
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
Bra018320 Brassica rapa Bra018320 I 0.818
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.818
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.818
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.818
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.818
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
Bo4g059520 Brassica oleracea Bo4g059520 I 0.818
F775_25790 Aegilops tauschii F775_25790 I 0.818
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.808
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.808
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.808
Si004575m.g Setaria italica Si004575m.g I 0.808
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.808
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.808
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.808
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.808
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.808
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.808
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.808
OBART01G35680 Oryza barthii OBART01G35680 I 0.808
F775_52636 Aegilops tauschii F775_52636 I 0.808
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.808
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.808
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.808
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.808
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.808
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.808
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.808
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.808
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.808
OS01G0825000 Oryza sativa OS01G0825000 I 0.808
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.798
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.798
OB01G44400 Oryza brachyantha OB01G44400 I 0.798
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.798
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.763
OB05G14280 Oryza brachyantha OB05G14280 I 0.758
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
PK18922.1 Cannabis sativa PK18922.1 I 0.737
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.737
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.717
TCM_016952 Theobroma cacao TCM_016952 I 0.707
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707