Solyc06g050430.2 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc06g050430.2 T246092_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.808 0.808
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.808 0.808
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g050430.2.1 LOB 44 142

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 1.000
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.949
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.949
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.949
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.949
TCM_045438 Theobroma cacao TCM_045438 I 0.949
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.949
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.939
29729.m002335 Ricinus communis 29729.m002335 I 0.939
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.939
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.939
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.939
PK21617.1 Cannabis sativa PK21617.1 I 0.935
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.929
LBD15 Arabidopsis thaliana AT2G40470 I 0.929
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.929
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.929
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.929
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.929
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.929
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.929
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.929
PK17217.1 Cannabis sativa PK17217.1 I 0.929
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.929
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.929
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.929
MDP0000167580 Malus domestica MDP0000167580 I 0.920
Bra000188 Brassica rapa Bra000188 I 0.919
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.919
Ca_04126 Cicer arietinum Ca_04126 I 0.919
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.919
Bo3g034980 Brassica oleracea Bo3g034980 I 0.919
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.909
Cla007391 Citrullus lanatus Cla007391 I 0.909
Ca_12420 Cicer arietinum Ca_12420 I 0.909
Bo4g012620 Brassica oleracea Bo4g012620 I 0.909
MDP0000278334 Malus domestica MDP0000278334 I 0.909
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.909
Bra004572 Brassica rapa Bra004572 I 0.909
Bo4g190210 Brassica oleracea Bo4g190210 I 0.909
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.909
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.909
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.909
TCM_042262 Theobroma cacao TCM_042262 I 0.899
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.899
Bra016992 Brassica rapa Bra016992 I 0.899
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.899
OB05G14280 Oryza brachyantha OB05G14280 I 0.897
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.889
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.879
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.879
Ca_15642 Cicer arietinum Ca_15642 I 0.879
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.879
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.879
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.879
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.879
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.879
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.877
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.869
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.869
OS05G0165450 Oryza sativa OS05G0165450 I 0.869
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.869
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.869
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.869
Si012018m.g Setaria italica Si012018m.g I 0.869
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.869
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.869
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.869
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.869
OBART05G04570 Oryza barthii OBART05G04570 I 0.869
29957.m001411 Ricinus communis 29957.m001411 I 0.869
mgf011471m Mimulus guttatus mgf011471m I 0.869
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.869
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.869
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.869
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.869
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.869
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.869
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.863
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.859
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.859
PK05388.1 Cannabis sativa PK05388.1 I 0.857
Pm019028 Prunus mume Pm019028 I 0.855
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.851
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.848
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.848
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.848
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.848
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.848
F775_52636 Aegilops tauschii F775_52636 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.848
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.838
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.838
OS01G0825000 Oryza sativa OS01G0825000 I 0.838
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.838
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.838
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.838
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.838
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.838
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.838
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.838
OBART01G35680 Oryza barthii OBART01G35680 I 0.838
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Si004575m.g Setaria italica Si004575m.g I 0.838
F775_25790 Aegilops tauschii F775_25790 I 0.838
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.838
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.838
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
Pm000277 Prunus mume Pm000277 I 0.828
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.828
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.828
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.824
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.818
Bra018320 Brassica rapa Bra018320 I 0.808
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.808
LBD13 Arabidopsis thaliana AT2G30340 D 0.808
Bo4g172950 Brassica oleracea Bo4g172950 I 0.808
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.808
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.808
Bra021627 Brassica rapa Bra021627 I 0.808
Bo4g059520 Brassica oleracea Bo4g059520 I 0.808
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.798
Bo4g190140 Brassica oleracea Bo4g190140 I 0.789
PK03716.1 Cannabis sativa PK03716.1 I 0.765
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.763
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
Cla006731 Citrullus lanatus Cla006731 I 0.745
MDP0000284409 Malus domestica MDP0000284409 I 0.737
MDP0000268890 Malus domestica MDP0000268890 I 0.737
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
mgf026046m Mimulus guttatus mgf026046m I 0.737
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.737
Pm011040 Prunus mume Pm011040 I 0.737
PK29334.1 Cannabis sativa PK29334.1 I 0.734
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.734
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.727
Si026864m.g Setaria italica Si026864m.g I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.727
30169.m006340 Ricinus communis 30169.m006340 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
LBD4 Arabidopsis thaliana AT1G31320 D 0.717
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.717
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
TCM_029315 Theobroma cacao TCM_029315 I 0.717
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.717
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.717
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.717
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.717
MDP0000121203 Malus domestica MDP0000121203 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.717
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.717
Cla013678 Citrullus lanatus Cla013678 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.717
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
Ca_13575 Cicer arietinum Ca_13575 I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.717
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.717
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.717
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.717
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
Ca_12450 Cicer arietinum Ca_12450 I 0.717
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
PK24688.1 Cannabis sativa PK24688.1 I 0.707
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.707
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
Ca_08998 Cicer arietinum Ca_08998 I 0.707
Ca_06548 Cicer arietinum Ca_06548 I 0.707
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.707
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707
Bra014907 Brassica rapa Bra014907 I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.707
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706