Solyc06g082430.1 (Solanum lycopersicum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Solyc06g082430.1 T246099_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.838 0.838
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g082430.1.1 LOB 50 148

Links

Other LOB family TFs
Other Solanum lycopersicum TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.990
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.919
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.909
mgf011471m Mimulus guttatus mgf011471m I 0.909
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.899
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.889
TCM_042262 Theobroma cacao TCM_042262 I 0.889
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.889
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.889
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.889
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.889
PK17217.1 Cannabis sativa PK17217.1 I 0.889
29729.m002335 Ricinus communis 29729.m002335 I 0.889
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.879
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.879
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.879
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.879
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.879
Cla007391 Citrullus lanatus Cla007391 I 0.879
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.879
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.879
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.879
Ca_15642 Cicer arietinum Ca_15642 I 0.879
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.879
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
TCM_045438 Theobroma cacao TCM_045438 I 0.879
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.879
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
Ca_04126 Cicer arietinum Ca_04126 I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.869
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
Bo3g034980 Brassica oleracea Bo3g034980 I 0.869
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.869
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.869
Bra000188 Brassica rapa Bra000188 I 0.869
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
29957.m001411 Ricinus communis 29957.m001411 I 0.859
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.859
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
Bra016992 Brassica rapa Bra016992 I 0.859
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.859
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.859
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.859
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.859
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.859
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.848
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.848
Si012018m.g Setaria italica Si012018m.g I 0.848
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.848
MDP0000278334 Malus domestica MDP0000278334 I 0.848
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.838
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.838
mgf020556m Mimulus guttatus mgf020556m I 0.838
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.838
LBD13 Arabidopsis thaliana AT2G30340 D 0.838
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.838
Bra018320 Brassica rapa Bra018320 I 0.838
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
Pm000277 Prunus mume Pm000277 I 0.838
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.838
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.828
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.828
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.828
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.828
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.828
Bra021627 Brassica rapa Bra021627 I 0.828
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.818
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.818
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.818
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.818
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.818
F775_25790 Aegilops tauschii F775_25790 I 0.818
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.818
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.818
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.818
OBART05G04570 Oryza barthii OBART05G04570 I 0.818
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.818
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.818
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.818
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.818
OS05G0165450 Oryza sativa OS05G0165450 I 0.818
Si004575m.g Setaria italica Si004575m.g I 0.818
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.808
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.808
OBART01G35680 Oryza barthii OBART01G35680 I 0.808
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.808
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.808
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.808
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.808
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.808
OS01G0825000 Oryza sativa OS01G0825000 I 0.808
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.808
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.808
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.808
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.808
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.808
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.798
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.798
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.798
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.798
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.798
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.798
OB01G44400 Oryza brachyantha OB01G44400 I 0.798
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.798
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.798
F775_52636 Aegilops tauschii F775_52636 I 0.798
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.788
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.788
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.788
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.788
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.778
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
OB05G14280 Oryza brachyantha OB05G14280 I 0.758
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.747
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.712
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.707
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
Cla009336 Citrullus lanatus Cla009336 I 0.707
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
Bra018335 Brassica rapa Bra018335 I 0.707