CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc06g083930.1
(
Solanum lycopersicum
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
Solyc06g083930.1
T246101_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.818
0.818
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.818
0.818
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.818
0.818
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.707
0.707
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc06g083930.1.1
LOB
7
106
PCGACKFLRRKCAVDCIFAPYFNSEEGPSKFAAIHKVFGASNVSKLLHNVPTDDRCDAVVTISYEAQARIKDPVYGCVANIFALQQQVAYLQSQLMQVKG
Links
Other
LOB
family TFs
Other
Solanum lycopersicum
TFs
231 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400020069
Solanum tuberosum
PGSC0003DMG400020069
I
0.970
PGSC0003DMG400009713
Solanum tuberosum
PGSC0003DMG400009713
I
0.869
Pm020629
Prunus mume
Pm020629
I
0.848
Solyc09g066260.2
Solanum lycopersicum
Solyc09g066260.2
I
0.848
cassava15612.m1
Manihot esculenta
cassava15612.m1
I
0.848
orange1.1g040761m.g
Citrus sinensis
orange1.1g040761m.g
I
0.848
gene08250-v1.0-hybrid
Fragaria vesca
gene08250-v1.0-hybrid
I
0.848
Ciclev10024416m.g
Citrus clementina
Ciclev10024416m.g
I
0.848
POPTR_0005s24320
Populus trichocarpa
POPTR_0005s24320
I
0.838
PRUPE_ppa025349mg
Prunus persica
PRUPE_ppa025349mg
I
0.838
MDP0000145761
Malus domestica
MDP0000145761
I
0.838
Aquca_034_00401
Aquilegia coerulea
Aquca_034_00401
I
0.838
29883.m002035
Ricinus communis
29883.m002035
I
0.838
TCM_004106
Theobroma cacao
TCM_004106
I
0.838
SapurV1A.0006s0980
Salix purpurea
SapurV1A.0006s0980
I
0.828
LBD16
Vitis vinifera
VIT_07s0005g03030
I
0.828
GLYMA19G34590
Glycine max
GLYMA19G34590
I
0.828
Cla006088
Citrullus lanatus
Cla006088
I
0.828
SapurV1A.0378s0180
Salix purpurea
SapurV1A.0378s0180
I
0.828
evm.TU.supercontig_50.43
Carica papaya
evm.TU.supercontig_50.43
I
0.828
Gorai.001G251600
Gossypium raimondii
Gorai.001G251600
I
0.828
Gorai.007G144400
Gossypium raimondii
Gorai.007G144400
I
0.828
LBD16
Arabidopsis lyrata
scaffold_403099.1
I
0.818
LBD16
Arabidopsis thaliana
AT2G42430
D
0.818
MDP0000131964
Malus domestica
MDP0000131964
I
0.818
MTR_7g096530
Medicago truncatula
MTR_7g096530
I
0.818
Bo4g191530
Brassica oleracea
Bo4g191530
I
0.818
POPTR_0002s04210
Populus trichocarpa
POPTR_0002s04210
I
0.818
GLYMA03G31830
Glycine max
GLYMA03G31830
I
0.818
Bostr.25993s0538
Boechera stricta
Bostr.25993s0538
I
0.818
Bo4g016000
Brassica oleracea
Bo4g016000
I
0.818
Ca_12213
Cicer arietinum
Ca_12213
I
0.818
Bra016877
Brassica rapa
Bra016877
I
0.818
Thhalv10017158m.g
Eutrema salsugineum
Thhalv10017158m.g
I
0.818
PDK_20s1428661g002
Phoenix dactylifera
PDK_20s1428661g002
I
0.818
Bra004693
Brassica rapa
Bra004693
I
0.818
Cucsa.053440
Cucumis sativus
Cucsa.053440
I
0.818
Gorai.004G073400
Gossypium raimondii
Gorai.004G073400
I
0.808
Cagra.2636s0029
Capsella grandiflora
Cagra.2636s0029
I
0.808
Carubv10025548m.g
Capsella rubella
Carubv10025548m.g
I
0.808
Aquca_017_00683
Aquilegia coerulea
Aquca_017_00683
I
0.808
LjT35F15.70.nd
Lotus japonicus
LjT35F15.70.nd
I
0.791
Bra000257
Brassica rapa
Bra000257
I
0.788
MTR_1g070220
Medicago truncatula
MTR_1g070220
I
0.788
Lus10024877.g
Linum usitatissimum
Lus10024877.g
I
0.788
GSMUA_Achr3G27340_001
Musa acuminata
GSMUA_Achr3G27340_001
I
0.788
Bo3g036030
Brassica oleracea
Bo3g036030
I
0.788
gw1.190.59.1
Physcomitrella patens
gw1.190.59.1
I
0.784
mgf026090m
Mimulus guttatus
mgf026090m
I
0.781
POPTR_0002s14990
Populus trichocarpa
POPTR_0002s14990
I
0.779
Lus10033872.g
Linum usitatissimum
Lus10033872.g
I
0.778
Lus10000707.g
Linum usitatissimum
Lus10000707.g
I
0.768
chr5.CM0494.160.nd
Lotus japonicus
chr5.CM0494.160.nd
I
0.767
Bra001087
Brassica rapa
Bra001087
I
0.765
Bo3g036000
Brassica oleracea
Bo3g036000
I
0.763
PK23380.1
Cannabis sativa
PK23380.1
I
0.761
gw1.42.84.1
Physcomitrella patens
gw1.42.84.1
I
0.759
OB02G44330
Oryza brachyantha
OB02G44330
I
0.758
Gorai.004G219900
Gossypium raimondii
Gorai.004G219900
I
0.758
GSMUA_Achr1G01350_001
Musa acuminata
GSMUA_Achr1G01350_001
I
0.758
Eucgr.K03284
Eucalyptus grandis
Eucgr.K03284
I
0.758
Lus10014757.g
Linum usitatissimum
Lus10014757.g
I
0.758
OLONG_001985
Oryza longistaminata
OLONG_001985
I
0.756
BGIOSGA005344
Oryza indica
BGIOSGA005344
I
0.747
OMERI02G35350
Oryza meridionalis
OMERI02G35350
I
0.747
OS02G0820500
Oryza sativa
OS02G0820500
I
0.747
Sb04g037550
Sorghum bicolor
Sb04g037550
I
0.747
Si019578m.g
Setaria italica
Si019578m.g
I
0.747
ORUFI02G39110
Oryza rufipogon
ORUFI02G39110
I
0.747
ORGLA02G0327800
Oryza glaberrima
ORGLA02G0327800
I
0.747
ONIVA02G40360
Oryza nivara
ONIVA02G40360
I
0.747
GRMZM2G075499
Zea mays
GRMZM2G075499
I
0.747
Pavir.J39638
Panicum virgatum
Pavir.J39638
I
0.747
GLYMA10G04040
Glycine max
GLYMA10G04040
I
0.747
Pavir.Aa00097
Panicum virgatum
Pavir.Aa00097
I
0.747
LPERR02G31040
Leersia perrieri
LPERR02G31040
I
0.747
OGLUM02G38740
Oryza glumaepatula
OGLUM02G38740
I
0.747
MDP0000254224
Malus domestica
MDP0000254224
I
0.739
TCM_005496
Theobroma cacao
TCM_005496
I
0.739
OPUNC02G34750
Oryza punctata
OPUNC02G34750
I
0.737
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.737
gw1.261.12.1
Physcomitrella patens
gw1.261.12.1
I
0.737
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.737
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.737
SELMODRAFT_59642
Selaginella moellendorffii
SELMODRAFT_59642
I
0.736
SELMODRAFT_49270
Selaginella moellendorffii
SELMODRAFT_49270
I
0.736
MLOC_61947
Hordeum vulgare
MLOC_61947
I
0.735
PGSC0003DMG402012772
Solanum tuberosum
PGSC0003DMG402012772
I
0.734
evm.TU.supercontig_18.118
Carica papaya
evm.TU.supercontig_18.118
I
0.733
POPTR_0047s00280
Populus trichocarpa
POPTR_0047s00280
I
0.731
ORGLA10G0025200
Oryza glaberrima
ORGLA10G0025200
I
0.727
Traes_6AL_D6045E37C
Triticum aestivum
Traes_6AL_D6045E37C
I
0.727
ORUFI10G03180
Oryza rufipogon
ORUFI10G03180
I
0.727
Aquca_009_00560
Aquilegia coerulea
Aquca_009_00560
I
0.727
BGIOSGA032254
Oryza indica
BGIOSGA032254
I
0.727
OPUNC10G02630
Oryza punctata
OPUNC10G02630
I
0.727
gw1.157.74.1
Physcomitrella patens
gw1.157.74.1
I
0.727
GLYMA13G18191
Glycine max
GLYMA13G18191
I
0.727
BRADI3G55680
Brachypodium distachyon
BRADI3G55680
I
0.727
OGLUM10G03230
Oryza glumaepatula
OGLUM10G03230
I
0.727
TRIUR3_01477
Triticum urartu
TRIUR3_01477
I
0.727
Carubv10018619m.g
Capsella rubella
Carubv10018619m.g
I
0.727
Cagra.0686s0035
Capsella grandiflora
Cagra.0686s0035
I
0.727
OS10G0162600
Oryza sativa
OS10G0162600
I
0.727
ONIVA10G03250
Oryza nivara
ONIVA10G03250
I
0.727
GSMUA_Achr5G13230_001
Musa acuminata
GSMUA_Achr5G13230_001
I
0.727
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
0.727
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.727
OBART02G37570
Oryza barthii
OBART02G37570
I
0.724
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.723
30174.m008898
Ricinus communis
30174.m008898
I
0.717
PK21617.1
Cannabis sativa
PK21617.1
I
0.717
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.717
Bo1g153580
Brassica oleracea
Bo1g153580
I
0.717
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.717
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.717
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.717
Thhalv10021301m.g
Eutrema salsugineum
Thhalv10021301m.g
I
0.717
Bostr.19046s0098
Boechera stricta
Bostr.19046s0098
I
0.717
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.717
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.717
Gorai.007G144500
Gossypium raimondii
Gorai.007G144500
I
0.717
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.717
Gorai.001G251700
Gossypium raimondii
Gorai.001G251700
I
0.717
gene08253-v1.0-hybrid
Fragaria vesca
gene08253-v1.0-hybrid
I
0.717
Pm020628
Prunus mume
Pm020628
I
0.717
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.717
Carubv10015417m.g
Capsella rubella
Carubv10015417m.g
I
0.717
gw1.61.81.1
Physcomitrella patens
gw1.61.81.1
I
0.717
SapurV1A.0024s0780
Salix purpurea
SapurV1A.0024s0780
I
0.717
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.717
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.717
Cagra.2098s0013
Capsella grandiflora
Cagra.2098s0013
I
0.717
LBD20
Arabidopsis thaliana
AT3G03760
I
0.717
gw1.35.169.1
Physcomitrella patens
gw1.35.169.1
I
0.717
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.717
PRUPE_ppa019939mg
Prunus persica
PRUPE_ppa019939mg
I
0.717
Pm020627
Prunus mume
Pm020627
I
0.717
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.717
MTR_7g096610
Medicago truncatula
MTR_7g096610
I
0.717
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.717
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.717
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.717
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.717
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.717
OS03G0246900
Oryza sativa
OS03G0246900
I
0.717
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.717
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.717
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.717
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.717
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.717
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.717
LBD20
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_3000301
I
0.717
MTR_8g036085
Medicago truncatula
MTR_8g036085
I
0.717
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.717
Bra040311
Brassica rapa
Bra040311
I
0.717
Traes_6DL_850266B2A
Triticum aestivum
Traes_6DL_850266B2A
I
0.717
Bra036436
Brassica rapa
Bra036436
I
0.717
Cla007068
Citrullus lanatus
Cla007068
I
0.717
Pm017936
Prunus mume
Pm017936
I
0.717
OBART03G10450
Oryza barthii
OBART03G10450
I
0.717
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.717
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.717
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
0.717
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.717
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.717
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.717
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.717
Ca_20429
Cicer arietinum
Ca_20429
I
0.708
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.707
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
0.707
OB03G13890
Oryza brachyantha
OB03G13890
I
0.707
MTR_1g070205
Medicago truncatula
MTR_1g070205
I
0.707
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.707
Gorai.007G346200
Gossypium raimondii
Gorai.007G346200
I
0.707
Lus10000613.g
Linum usitatissimum
Lus10000613.g
I
0.707
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.707
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.707
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.707
GLYMA09G40500
Glycine max
GLYMA09G40500
I
0.707
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.707
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.707
Bra004910
Brassica rapa
Bra004910
I
0.707
Bra014581
Brassica rapa
Bra014581
I
0.707
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.707
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.707
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.707
orange1.1g042813m.g
Citrus sinensis
orange1.1g042813m.g
I
0.707
LBD18
Arabidopsis thaliana
AT2G45420
D
0.707
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.707
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.707
GLYMA18G45320
Glycine max
GLYMA18G45320
I
0.707
OB10G12360
Oryza brachyantha
OB10G12360
I
0.707
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.707
Eucgr.K01522
Eucalyptus grandis
Eucgr.K01522
I
0.707
PRUPE_ppa024802mg
Prunus persica
PRUPE_ppa024802mg
I
0.707
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.707
PRUPE_ppa025889mg
Prunus persica
PRUPE_ppa025889mg
I
0.707
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.707
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
0.707
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.707
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.707
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.707
mgf020773m
Mimulus guttatus
mgf020773m
I
0.707
Ca_07763
Cicer arietinum
Ca_07763
I
0.707
28428.m000040
Ricinus communis
28428.m000040
I
0.707
Pm028642
Prunus mume
Pm028642
I
0.707
LBD20
Vitis vinifera
VIT_08s0056g01650
I
0.707
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.707
mgf006429m
Mimulus guttatus
mgf006429m
I
0.707
Si040019m.g
Setaria italica
Si040019m.g
I
0.707
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
0.707
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.707
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.707
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.707
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.707
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.707
evm.TU.supercontig_50.42
Carica papaya
evm.TU.supercontig_50.42
I
0.707
gene08254-v1.0-hybrid
Fragaria vesca
gene08254-v1.0-hybrid
I
0.707
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.707
Ciclev10021843m.g
Citrus clementina
Ciclev10021843m.g
I
0.707
OBART03G03830
Oryza barthii
OBART03G03830
I
0.707
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.707
PGSC0003DMG400022454
Solanum tuberosum
PGSC0003DMG400022454
I
0.707
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.707
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.707
OS03G0149100
Oryza sativa
OS03G0149100
I
0.707
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.707
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
0.707
gene24461-v1.0-hybrid
Fragaria vesca
gene24461-v1.0-hybrid
I
0.707
Aquca_009_00958
Aquilegia coerulea
Aquca_009_00958
I
0.704