TCM_016952 (Theobroma cacao)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 TCM_016952 T246127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.889 0.889
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY02489 LOB 10 108

Links

Other LOB family TFs
Other Theobroma cacao TFs

202 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm015649 Prunus mume Pm015649 I 0.970
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.970
PK26472.1 Cannabis sativa PK26472.1 I 0.970
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.970
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.970
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.960
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.960
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.960
MDP0000848210 Malus domestica MDP0000848210 I 0.960
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.960
29917.m001993 Ricinus communis 29917.m001993 I 0.960
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.949
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.949
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.949
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.949
Ca_24372 Cicer arietinum Ca_24372 I 0.949
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.949
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.949
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.939
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.939
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.939
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.939
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.939
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.939
Cla017388 Citrullus lanatus Cla017388 I 0.929
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.929
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.929
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.929
Cla010600 Citrullus lanatus Cla010600 I 0.929
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.919
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.919
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.909
MDP0000254288 Malus domestica MDP0000254288 I 0.899
MDP0000130659 Malus domestica MDP0000130659 I 0.899
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.899
LOB Vitis vinifera VIT_17s0000g09010 I 0.899
Cla019510 Citrullus lanatus Cla019510 I 0.899
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.899
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.899
30147.m013890 Ricinus communis 30147.m013890 I 0.899
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.899
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.899
TCM_012190 Theobroma cacao TCM_012190 I 0.899
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.899
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.899
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.899
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.889
LOB Arabidopsis thaliana AT5G63090 D 0.889
Bo3g104760 Brassica oleracea Bo3g104760 I 0.889
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.889
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.889
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.889
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.889
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.889
Pm024312 Prunus mume Pm024312 I 0.889
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.889
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.889
Ca_08824 Cicer arietinum Ca_08824 I 0.889
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.889
Bra038606 Brassica rapa Bra038606 I 0.889
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.889
LOB Arabidopsis lyrata scaffold_802995.1 I 0.889
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.889
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.889
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.889
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.889
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.879
PK21510.1 Cannabis sativa PK21510.1 I 0.879
Bo9g017470 Brassica oleracea Bo9g017470 I 0.879
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.879
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.879
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.879
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.879
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.879
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.879
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.879
LBD25 Arabidopsis thaliana AT3G27650 I 0.879
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.879
Ca_07463 Cicer arietinum Ca_07463 I 0.869
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.869
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.869
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.869
OB01G14220 Oryza brachyantha OB01G14220 I 0.869
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.869
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.869
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.869
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.869
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.869
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.869
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.869
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.869
mgf024603m Mimulus guttatus mgf024603m I 0.869
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
Si002632m.g Setaria italica Si002632m.g I 0.869
Bra025294 Brassica rapa Bra025294 I 0.859
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.859
Bo9g008330 Brassica oleracea Bo9g008330 I 0.859
OS01G0169400 Oryza sativa OS01G0169400 I 0.859
Bra039072 Brassica rapa Bra039072 I 0.859
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.859
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.859
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.859
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.859
OBART01G04470 Oryza barthii OBART01G04470 I 0.859
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.859
Bra035860 Brassica rapa Bra035860 I 0.859
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.848
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.848
mgf003146m Mimulus guttatus mgf003146m I 0.848
Bo7g085860 Brassica oleracea Bo7g085860 I 0.848
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.848
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.833
Bra033019 Brassica rapa Bra033019 I 0.828
mgf016361m Mimulus guttatus mgf016361m I 0.828
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.828
Bo2g144870 Brassica oleracea Bo2g144870 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.818
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.818
Cla003499 Citrullus lanatus Cla003499 I 0.808
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.808
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.808
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.805
F775_33210 Aegilops tauschii F775_33210 I 0.795
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.792
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.788
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.788
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.768
PK29334.1 Cannabis sativa PK29334.1 I 0.766
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.753
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.753
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.747
PK21617.1 Cannabis sativa PK21617.1 I 0.739
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.737
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.737
MDP0000273432 Malus domestica MDP0000273432 I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
mgf014755m Mimulus guttatus mgf014755m I 0.737
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.737
Cla005851 Citrullus lanatus Cla005851 I 0.737
LBD6 Arabidopsis thaliana AT1G65620 D 0.727
MDP0000643326 Malus domestica MDP0000643326 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.727
Bo2g051420 Brassica oleracea Bo2g051420 I 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.727
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.727
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.727
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.727
Bra039733 Brassica rapa Bra039733 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.727
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.727
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.727
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.727
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
OS05G0417000 Oryza sativa OS05G0417000 I 0.717
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.717
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.717
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
OB05G24560 Oryza brachyantha OB05G24560 I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.717
F775_21760 Aegilops tauschii F775_21760 I 0.717
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.713
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.709
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.707
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.707
MDP0000194766 Malus domestica MDP0000194766 I 0.707
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707