TCM_042262 (Theobroma cacao)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 TCM_042262 T246143_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG

CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.848 0.848
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG

CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.848 0.848
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY34664 LOB 40 138

Links

Other LOB family TFs
Other Theobroma cacao TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.970
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.949
29729.m002335 Ricinus communis 29729.m002335 I 0.939
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.929
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.929
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.929
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.929
TCM_045438 Theobroma cacao TCM_045438 I 0.929
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.929
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.919
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.919
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.919
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.919
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.919
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.909
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.909
mgf011471m Mimulus guttatus mgf011471m I 0.909
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.909
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.909
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.909
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.909
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.909
PK17217.1 Cannabis sativa PK17217.1 I 0.909
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.909
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.899
LBD15 Arabidopsis thaliana AT2G40470 I 0.899
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.899
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.899
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.899
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.899
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.899
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.899
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.899
29957.m001411 Ricinus communis 29957.m001411 I 0.899
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.899
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.899
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.899
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.899
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.899
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.889
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.889
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.889
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.889
Bra000188 Brassica rapa Bra000188 I 0.889
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.889
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.889
Ca_15642 Cicer arietinum Ca_15642 I 0.889
MDP0000278334 Malus domestica MDP0000278334 I 0.889
Si012018m.g Setaria italica Si012018m.g I 0.889
Cla007391 Citrullus lanatus Cla007391 I 0.889
Bo3g034980 Brassica oleracea Bo3g034980 I 0.889
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.889
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.889
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.889
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.889
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.879
Pm000277 Prunus mume Pm000277 I 0.879
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.879
Ca_04126 Cicer arietinum Ca_04126 I 0.879
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.879
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.879
Bo4g190210 Brassica oleracea Bo4g190210 I 0.879
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.879
Bra004572 Brassica rapa Bra004572 I 0.879
Bra016992 Brassica rapa Bra016992 I 0.879
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.879
OBART05G04570 Oryza barthii OBART05G04570 I 0.879
Bo4g012620 Brassica oleracea Bo4g012620 I 0.879
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.879
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.879
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.879
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.879
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.879
OS05G0165450 Oryza sativa OS05G0165450 I 0.879
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.869
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.869
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.869
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.869
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.869
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
F775_52636 Aegilops tauschii F775_52636 I 0.859
F775_25790 Aegilops tauschii F775_25790 I 0.859
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.859
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.859
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.859
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.859
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.859
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.859
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.859
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.859
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.859
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
Si004575m.g Setaria italica Si004575m.g I 0.848
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.848
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.848
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.848
OS01G0825000 Oryza sativa OS01G0825000 I 0.848
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.848
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
OBART01G35680 Oryza barthii OBART01G35680 I 0.848
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.848
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.848
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.848
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
OB01G44400 Oryza brachyantha OB01G44400 I 0.838
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.838
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.838
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.838
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.838
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.828
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.828
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.798
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.798
OB05G14280 Oryza brachyantha OB05G14280 I 0.788
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.778
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.746
mgf026046m Mimulus guttatus mgf026046m I 0.717
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.712
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.707
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.707
PK18922.1 Cannabis sativa PK18922.1 I 0.702