CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_042730
(
Theobroma cacao
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03195 (DUF260)
IPR004883
TCM_042730
T246146_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.737
0.737
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY18079
LOB
7
106
SCGACKFLRRKCTSECVFAPYFCYDEAASHFAAVHKVFGASNVSKLLLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQEEIEILIN
Links
Other
LOB
family TFs
Other
Theobroma cacao
TFs
180 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.011G267700
Gossypium raimondii
Gorai.011G267700
I
0.909
POPTR_0010s20800
Populus trichocarpa
POPTR_0010s20800
I
0.909
Eucgr.G02955
Eucalyptus grandis
Eucgr.G02955
I
0.899
SapurV1A.0281s0190
Salix purpurea
SapurV1A.0281s0190
I
0.869
Ciclev10033354m.g
Citrus clementina
Ciclev10033354m.g
I
0.869
LBD33
Vitis vinifera
VIT_13s0019g02060
N
0.869
cassava34632.m1
Manihot esculenta
cassava34632.m1
N
0.869
evm.TU.supercontig_1.438
Carica papaya
evm.TU.supercontig_1.438
I
0.869
30143.m001171
Ricinus communis
30143.m001171
N
0.859
gene26330-v1.0-hybrid
Fragaria vesca
gene26330-v1.0-hybrid
N
0.848
cassava15468.m1
Manihot esculenta
cassava15468.m1
I
0.838
GLYMA02G41710
Glycine max
GLYMA02G41710
N
0.828
Pm018835
Prunus mume
Pm018835
N
0.828
PRUPE_ppa018815mg
Prunus persica
PRUPE_ppa018815mg
N
0.828
MDP0000133936
Malus domestica
MDP0000133936
N
0.828
MDP0000123797
Malus domestica
MDP0000123797
N
0.818
Cla004059
Citrullus lanatus
Cla004059
N
0.818
Cucsa.165150
Cucumis sativus
Cucsa.165150
N
0.818
GLYMA14G07260
Glycine max
GLYMA14G07260
N
0.818
MTR_5g080470
Medicago truncatula
MTR_5g080470
N
0.808
Ca_16122
Cicer arietinum
Ca_16122
N
0.808
Cagra.2117s0054
Capsella grandiflora
Cagra.2117s0054
N
0.798
LBD33
Arabidopsis lyrata
Al_scaffold_0006_527
N
0.798
Carubv10002921m.g
Capsella rubella
Carubv10002921m.g
N
0.798
Bostr.13129s0366
Boechera stricta
Bostr.13129s0366
N
0.788
LBD33
Arabidopsis thaliana
AT5G06080
N
0.788
Bra009161
Brassica rapa
Bra009161
N
0.778
Bo9g176580
Brassica oleracea
Bo9g176580
N
0.778
LBD29
Arabidopsis lyrata
fgenesh2_kg.5__2263__AT3G58190.1
I
0.758
MLOC_55239
Hordeum vulgare
MLOC_55239
I
0.747
Traes_4AS_5971FF832
Triticum aestivum
Traes_4AS_5971FF832
I
0.747
LBD29
Arabidopsis thaliana
AT3G58190
I
0.747
Traes_4DL_A2012EA68
Triticum aestivum
Traes_4DL_A2012EA68
I
0.747
GSMUA_Achr1G02520_001
Musa acuminata
GSMUA_Achr1G02520_001
I
0.747
Traes_4BL_3FB579782
Triticum aestivum
Traes_4BL_3FB579782
I
0.737
OPUNC03G10080
Oryza punctata
OPUNC03G10080
I
0.737
ORGLA03G0035900
Oryza glaberrima
ORGLA03G0035900
I
0.737
Sb01g046990
Sorghum bicolor
Sb01g046990
I
0.737
OS03G0149100
Oryza sativa
OS03G0149100
I
0.737
OPUNC03G03520
Oryza punctata
OPUNC03G03520
I
0.737
OS03G0246900
Oryza sativa
OS03G0246900
I
0.737
ORUFI03G10670
Oryza rufipogon
ORUFI03G10670
I
0.737
POPTR_0002s04200
Populus trichocarpa
POPTR_0002s04200
I
0.737
Sb01g041130
Sorghum bicolor
Sb01g041130
I
0.737
ORUFI03G03550
Oryza rufipogon
ORUFI03G03550
I
0.737
ORGLA03G0100400
Oryza glaberrima
ORGLA03G0100400
I
0.737
Bostr.25993s0233
Boechera stricta
Bostr.25993s0233
I
0.737
Lus10033873.g
Linum usitatissimum
Lus10033873.g
I
0.737
Lus10004707.g
Linum usitatissimum
Lus10004707.g
N
0.737
Gorai.008G114400
Gossypium raimondii
Gorai.008G114400
I
0.737
orange1.1g036534m.g
Citrus sinensis
orange1.1g036534m.g
I
0.737
Pavir.Ia04220
Panicum virgatum
Pavir.Ia04220
I
0.737
Thhalv10001791m.g
Eutrema salsugineum
Thhalv10001791m.g
I
0.737
Pavir.J34872
Panicum virgatum
Pavir.J34872
I
0.737
Pavir.Ib00283
Panicum virgatum
Pavir.Ib00283
I
0.737
Eucgr.E01414
Eucalyptus grandis
Eucgr.E01414
I
0.737
Ciclev10021992m.g
Citrus clementina
Ciclev10021992m.g
I
0.737
Bostr.20903s0070
Boechera stricta
Bostr.20903s0070
I
0.737
Aquca_034_00400
Aquilegia coerulea
Aquca_034_00400
I
0.737
cassava36912.valid.m1
Manihot esculenta
cassava36912.valid.m1
I
0.737
ONIVA03G03580
Oryza nivara
ONIVA03G03580
I
0.737
Cagra.0686s0036
Capsella grandiflora
Cagra.0686s0036
I
0.737
Carubv10025050m.g
Capsella rubella
Carubv10025050m.g
I
0.737
Carubv10019250m.g
Capsella rubella
Carubv10019250m.g
I
0.737
Cagra.0698s0021
Capsella grandiflora
Cagra.0698s0021
I
0.737
30174.m008898
Ricinus communis
30174.m008898
I
0.737
Si040019m.g
Setaria italica
Si040019m.g
I
0.737
LPERR03G03470
Leersia perrieri
LPERR03G03470
I
0.737
LBD18
Arabidopsis lyrata
fgenesh2_kg.4__2737__AT2G45420.1
I
0.737
BGIOSGA011445
Oryza indica
BGIOSGA011445
I
0.737
OBART03G10450
Oryza barthii
OBART03G10450
I
0.737
GRMZM2G092542
Zea mays
GRMZM2G092542
I
0.737
GRMZM2G110913
Zea mays
GRMZM2G110913
I
0.737
LPERR03G09330
Leersia perrieri
LPERR03G09330
I
0.737
OBART03G03830
Oryza barthii
OBART03G03830
I
0.737
OGLUM03G10340
Oryza glumaepatula
OGLUM03G10340
I
0.737
BGIOSGA011118
Oryza indica
BGIOSGA011118
I
0.737
AMTR_s00041p00044170
Amborella trichopoda
AMTR_s00041p00044170
I
0.737
OMERI03G09680
Oryza meridionalis
OMERI03G09680
I
0.737
GSMUA_Achr5G11330_001
Musa acuminata
GSMUA_Achr5G11330_001
I
0.737
OB03G13890
Oryza brachyantha
OB03G13890
I
0.737
BRADI1G68170
Brachypodium distachyon
BRADI1G68170
I
0.737
LBD18
Arabidopsis thaliana
AT2G45420
D
0.737
GRMZM2G150594
Zea mays
GRMZM2G150594
I
0.737
OMERI07G01660
Oryza meridionalis
OMERI07G01660
I
0.737
GLYMA10G04050
Glycine max
GLYMA10G04050
I
0.727
GLYMA13G18210
Glycine max
GLYMA13G18210
I
0.727
Cucsa.362840
Cucumis sativus
Cucsa.362840
I
0.727
28428.m000040
Ricinus communis
28428.m000040
I
0.727
cassava28659.m1
Manihot esculenta
cassava28659.m1
I
0.727
Aquca_013_00578
Aquilegia coerulea
Aquca_013_00578
I
0.727
Aquca_017_00693
Aquilegia coerulea
Aquca_017_00693
I
0.727
Gorai.004G161100
Gossypium raimondii
Gorai.004G161100
I
0.727
SapurV1A.0006s0970
Salix purpurea
SapurV1A.0006s0970
I
0.727
Bo4g024620
Brassica oleracea
Bo4g024620
I
0.727
SapurV1A.0532s0190
Salix purpurea
SapurV1A.0532s0190
I
0.727
Thhalv10006226m.g
Eutrema salsugineum
Thhalv10006226m.g
I
0.727
LjSGA_002536.2
Lotus japonicus
LjSGA_002536.2
I
0.727
Lus10000613.g
Linum usitatissimum
Lus10000613.g
I
0.727
Bo8g092560
Brassica oleracea
Bo8g092560
I
0.727
Gorai.004G073300
Gossypium raimondii
Gorai.004G073300
I
0.727
evm.TU.supercontig_50.42
Carica papaya
evm.TU.supercontig_50.42
I
0.727
Pm017936
Prunus mume
Pm017936
I
0.727
Gorai.007G144500
Gossypium raimondii
Gorai.007G144500
I
0.727
Bra004910
Brassica rapa
Bra004910
I
0.727
Bra040311
Brassica rapa
Bra040311
I
0.727
mgf020773m
Mimulus guttatus
mgf020773m
I
0.727
GSMUA_AchrUn_randomG23710_001
Musa acuminata
GSMUA_AchrUn_randomG23710_001
I
0.727
Ca_07763
Cicer arietinum
Ca_07763
I
0.727
LBD30
Vitis vinifera
VIT_15s0048g00830
I
0.727
PRUPE_ppa010383mg
Prunus persica
PRUPE_ppa010383mg
I
0.727
MTR_7g096610
Medicago truncatula
MTR_7g096610
I
0.727
Cla007068
Citrullus lanatus
Cla007068
I
0.727
LjT35F15.90.nd
Lotus japonicus
LjT35F15.90.nd
I
0.717
MLOC_10784
Hordeum vulgare
MLOC_10784
I
0.717
Bostr.14547s0030
Boechera stricta
Bostr.14547s0030
I
0.717
Traes_4BL_A4D0F4AD6
Triticum aestivum
Traes_4BL_A4D0F4AD6
I
0.717
Traes_4DL_43D63ABE3
Triticum aestivum
Traes_4DL_43D63ABE3
I
0.717
GLYMA01G34540
Glycine max
GLYMA01G34540
I
0.717
Traes_4AL_CAF4E16B5
Triticum aestivum
Traes_4AL_CAF4E16B5
I
0.717
Bra014581
Brassica rapa
Bra014581
I
0.717
orange1.1g027399m.g
Citrus sinensis
orange1.1g027399m.g
I
0.717
Thhalv10015772m.g
Eutrema salsugineum
Thhalv10015772m.g
N
0.717
VIT_07s0005g03020
Vitis vinifera
VIT_07s0005g03020
I
0.717
Eucgr.B01529
Eucalyptus grandis
Eucgr.B01529
I
0.717
Solyc01g091420.1
Solanum lycopersicum
Solyc01g091420.1
I
0.717
Bo4g195520
Brassica oleracea
Bo4g195520
I
0.717
Ciclev10023341m.g
Citrus clementina
Ciclev10023341m.g
I
0.717
GSMUA_Achr2G11240_001
Musa acuminata
GSMUA_Achr2G11240_001
I
0.717
GSMUA_Achr11G02110_001
Musa acuminata
GSMUA_Achr11G02110_001
I
0.717
Ca_12214
Cicer arietinum
Ca_12214
I
0.717
cassava41632.m1
Manihot esculenta
cassava41632.m1
I
0.717
GSMUA_Achr8G14330_001
Musa acuminata
GSMUA_Achr8G14330_001
I
0.717
Aquca_003_00139
Aquilegia coerulea
Aquca_003_00139
N
0.717
Cla006087
Citrullus lanatus
Cla006087
I
0.707
BGIOSGA026473
Oryza indica
BGIOSGA026473
I
0.707
Pavir.Fa00011
Panicum virgatum
Pavir.Fa00011
I
0.707
OS08G0563400
Oryza sativa
OS08G0563400
I
0.707
Bo4g108600
Brassica oleracea
Bo4g108600
I
0.707
OBART08G23860
Oryza barthii
OBART08G23860
I
0.707
PGSC0003DMG400009716
Solanum tuberosum
PGSC0003DMG400009716
I
0.707
GSMUA_AchrUn_randomG07730_001
Musa acuminata
GSMUA_AchrUn_randomG07730_001
I
0.707
Bo4g191540
Brassica oleracea
Bo4g191540
N
0.707
Pavir.Ia02614
Panicum virgatum
Pavir.Ia02614
I
0.707
ORUFI08G26340
Oryza rufipogon
ORUFI08G26340
I
0.707
OLONG_020841
Oryza longistaminata
OLONG_020841
I
0.707
OPUNC08G21770
Oryza punctata
OPUNC08G21770
I
0.707
LjSGA_054888.1
Lotus japonicus
LjSGA_054888.1
I
0.707
Pm020628
Prunus mume
Pm020628
I
0.707
ORGLA08G0192400
Oryza glaberrima
ORGLA08G0192400
I
0.707
LBD17
Arabidopsis thaliana
AT2G42440
N
0.707
OMERI08G18670
Oryza meridionalis
OMERI08G18670
I
0.707
Pavir.Ib02517
Panicum virgatum
Pavir.Ib02517
I
0.707
OGLUM08G25340
Oryza glumaepatula
OGLUM08G25340
I
0.707
OLONG_010223
Oryza longistaminata
OLONG_010223
I
0.707
OGLUM03G03710
Oryza glumaepatula
OGLUM03G03710
I
0.707
OB08G30680
Oryza brachyantha
OB08G30680
I
0.707
GLYMA03G31860
Glycine max
GLYMA03G31860
I
0.707
Carubv10002489m.g
Capsella rubella
Carubv10002489m.g
I
0.707
GLYMA03G02620
Glycine max
GLYMA03G02620
I
0.707
Cucsa.053450
Cucumis sativus
Cucsa.053450
I
0.707
Cagra.1261s0013
Capsella grandiflora
Cagra.1261s0013
I
0.707
MLOC_52276
Hordeum vulgare
MLOC_52276
I
0.707
ONIVA09G01330
Oryza nivara
ONIVA09G01330
I
0.707
GRMZM2G076327
Zea mays
GRMZM2G076327
I
0.707
GLYMA19G34600
Glycine max
GLYMA19G34600
I
0.707
Bostr.25993s0537
Boechera stricta
Bostr.25993s0537
I
0.707
F775_02052
Aegilops tauschii
F775_02052
I
0.707
Cla021625
Citrullus lanatus
Cla021625
I
0.707
GSMUA_Achr1G01360_001
Musa acuminata
GSMUA_Achr1G01360_001
I
0.707
Si015156m.g
Setaria italica
Si015156m.g
I
0.707
Aquca_013_00580
Aquilegia coerulea
Aquca_013_00580
I
0.707
Gorai.004G220000
Gossypium raimondii
Gorai.004G220000
I
0.707
gene08253-v1.0-hybrid
Fragaria vesca
gene08253-v1.0-hybrid
I
0.707
Bra016876
Brassica rapa
Bra016876
N
0.707
BRADI1G75110
Brachypodium distachyon
BRADI1G75110
I
0.707
cassava40664.m1
Manihot esculenta
cassava40664.m1
I
0.707
Solyc09g066270.2
Solanum lycopersicum
Solyc09g066270.2
I
0.707
GSMUA_Achr10G06700_001
Musa acuminata
GSMUA_Achr10G06700_001
I
0.707
PRUPE_ppa025889mg
Prunus persica
PRUPE_ppa025889mg
I
0.707