TRIUR3_10339 (Triticum urartu)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 TRIUR3_10339 T246215_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.771 0.771
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.719 0.719
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRIUR3_10339-P1 LOB 27 122

Links

Other LOB family TFs
Other Triticum urartu TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB76 Arabidopsis lyrata Al_scaffold_0006_698 I 0.000
MYB51 Arabidopsis thaliana AT1G18570 D 0.000
MYB29 Arabidopsis thaliana AT5G07690 I 0.000
MYB76 Arabidopsis thaliana AT5G07700 I 0.000
MYB34 Arabidopsis thaliana AT5G60890 I 0.000
MYB28 Arabidopsis thaliana AT5G61420 I 0.000
Bo2g080900 Brassica oleracea Bo2g080900 I 0.000
Bo2g161170 Brassica oleracea Bo2g161170 I 0.000
Bo2g161180 Brassica oleracea Bo2g161180 I 0.000
Bo2g161590 Brassica oleracea Bo2g161590 I 0.000
Bo3g004500 Brassica oleracea Bo3g004500 I 0.000
Bo5g025570 Brassica oleracea Bo5g025570 I 0.000
Bo6g118350 Brassica oleracea Bo6g118350 I 0.000
Bo7g098110 Brassica oleracea Bo7g098110 I 0.000
Bo7g098590 Brassica oleracea Bo7g098590 I 0.000
Bo8g067910 Brassica oleracea Bo8g067910 I 0.000
Bo8g104300 Brassica oleracea Bo8g104300 I 0.000
Bo9g014380 Brassica oleracea Bo9g014380 I 0.000
Bo9g014610 Brassica oleracea Bo9g014610 I 0.000
Bo9g175680 Brassica oleracea Bo9g175680 I 0.000
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.000
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.000
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.000
Bostr.3288s0058 Boechera stricta Bostr.3288s0058 I 0.000
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.000
Bra005949 Brassica rapa Bra005949 I 0.000
Bra008131 Brassica rapa Bra008131 I 0.000
Bra012961 Brassica rapa Bra012961 I 0.000
Bra013000 Brassica rapa Bra013000 I 0.000
Bra015939 Brassica rapa Bra015939 I 0.000
Bra016553 Brassica rapa Bra016553 I 0.000
Bra025666 Brassica rapa Bra025666 I 0.000
Bra029311 Brassica rapa Bra029311 I 0.000
Bra029349 Brassica rapa Bra029349 I 0.000
Bra029350 Brassica rapa Bra029350 I 0.000
Bra031035 Brassica rapa Bra031035 I 0.000
Bra035929 Brassica rapa Bra035929 I 0.000
Bra035954 Brassica rapa Bra035954 I 0.000
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.000
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.000
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.000
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.000
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.000
Carubv10020723m.g Capsella rubella Carubv10020723m.g I 0.000
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.000
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.000
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.000
cassava46145.m1 Manihot esculenta cassava46145.m1 I 0.000
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.000
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.000
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.000
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.000
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.000
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.000
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.000
Gorai.003G097900 Gossypium raimondii Gorai.003G097900 I 0.000
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.000
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.000
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.000
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I 0.000
Pavir.Ca00232 Panicum virgatum Pavir.Ca00232 I 0.000
PK01174.1 Cannabis sativa PK01174.1 I 0.000
PK14811.1 Cannabis sativa PK14811.1 I 0.000
PK27708.1 Cannabis sativa PK27708.1 I 0.000
Sb08g004720 Sorghum bicolor Sb08g004720 I 0.000
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.000
Si011098m.g Setaria italica Si011098m.g I 0.000
Si012017m.g Setaria italica Si012017m.g I 0.000
Si012585m.g Setaria italica Si012585m.g I 0.000
TCM_014091 Theobroma cacao TCM_014091 I 0.000
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.000
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.000
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.000
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.000
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.000