Ca_19716 (Cicer arietinum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Ca_19716 T246317_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.737 0.737
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.737 0.737
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.737 0.737
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.717 0.717
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ca_19716 LOB 37 136

Links

Other LOB family TFs
Other Cicer arietinum TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g027710 Medicago truncatula MTR_6g027710 I 0.909
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.854
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.848
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.838
30072.m000955 Ricinus communis 30072.m000955 I 0.838
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.838
GLYMA19G30200 Glycine max GLYMA19G30200 I 0.838
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.838
GLYMA02G27230 Glycine max GLYMA02G27230 I 0.828
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.828
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.828
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.828
chr1.LjT38H23.30.nd Lotus japonicus chr1.LjT38H23.30.nd I 0.828
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.828
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.828
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.828
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.828
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.828
TCM_025849 Theobroma cacao TCM_025849 I 0.828
LBD20 Arabidopsis thaliana AT3G03760 I 0.828
Bra036436 Brassica rapa Bra036436 I 0.828
Bo1g153580 Brassica oleracea Bo1g153580 I 0.828
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.818
GLYMA10G11031 Glycine max GLYMA10G11031 I 0.808
Pm028642 Prunus mume Pm028642 I 0.808
mgf006429m Mimulus guttatus mgf006429m I 0.808
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.808
MDP0000322059 Malus domestica MDP0000322059 I 0.808
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.807
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.805
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.788
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.788
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.788
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.778
Cla002965 Citrullus lanatus Cla002965 I 0.778
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.778
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.770
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.770
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.768
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.768
chr2.LjT13P17.280.nd Lotus japonicus chr2.LjT13P17.280.nd I 0.768
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.768
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.768
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.758
Bra004693 Brassica rapa Bra004693 I 0.747
Bo4g191530 Brassica oleracea Bo4g191530 I 0.747
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.747
Bo4g016000 Brassica oleracea Bo4g016000 I 0.747
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.747
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.747
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.747
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.747
TCM_005496 Theobroma cacao TCM_005496 I 0.739
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.737
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.737
LBD16 Arabidopsis thaliana AT2G42430 D 0.737
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.737
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.737
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.737
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.737
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.737
Pm017936 Prunus mume Pm017936 I 0.737
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.737
Bra016877 Brassica rapa Bra016877 I 0.737
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.737
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.737
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.737
GSMUA_Achr9G10530_001 Musa acuminata GSMUA_Achr9G10530_001 I 0.737
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.737
OBART03G10450 Oryza barthii OBART03G10450 I 0.727
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.727
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.727
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.727
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.727
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.727
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.727
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.727
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.727
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.727
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.727
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.727
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.727
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.727
Cla007068 Citrullus lanatus Cla007068 I 0.727
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.727
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.727
OS03G0246900 Oryza sativa OS03G0246900 I 0.727
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.723
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.721
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.717
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
LBD18 Arabidopsis thaliana AT2G45420 D 0.717
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.717
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.717
Bra040311 Brassica rapa Bra040311 I 0.717
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.717
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.717
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.717
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.717
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.717
Bra000257 Brassica rapa Bra000257 I 0.717
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.717
Bra004910 Brassica rapa Bra004910 I 0.717
Bo4g024620 Brassica oleracea Bo4g024620 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.717
Bo3g036030 Brassica oleracea Bo3g036030 I 0.717
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.717
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.717
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.707
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.707
F775_02052 Aegilops tauschii F775_02052 I 0.707
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.707
Ca_12213 Cicer arietinum Ca_12213 I 0.707
Bo4g195520 Brassica oleracea Bo4g195520 I 0.707
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.707
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.707
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.707
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.707
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.707
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
OB10G12360 Oryza brachyantha OB10G12360 I 0.707
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.707