CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla003499
(
Citrullus lanatus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Cla003499
T246326_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.838
0.838
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla003499
LOB
13
111
PCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQKLQKELDAAKA
Links
Other
LOB
family TFs
Other
Citrullus lanatus
TFs
241 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.970
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.879
Si002632m.g
Setaria italica
Si002632m.g
I
0.869
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.869
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.869
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.869
OB01G14220
Oryza brachyantha
OB01G14220
I
0.869
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.869
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.869
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.869
Cla019510
Citrullus lanatus
Cla019510
I
0.869
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.869
TCM_012190
Theobroma cacao
TCM_012190
I
0.869
MDP0000254288
Malus domestica
MDP0000254288
I
0.869
MDP0000130659
Malus domestica
MDP0000130659
I
0.869
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.869
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.869
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.869
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.869
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.869
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.869
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.869
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.859
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.859
OBART01G04470
Oryza barthii
OBART01G04470
I
0.859
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.859
mgf016361m
Mimulus guttatus
mgf016361m
I
0.859
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.859
30147.m013890
Ricinus communis
30147.m013890
I
0.859
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.859
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.859
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.859
Pm024312
Prunus mume
Pm024312
I
0.859
OS01G0169400
Oryza sativa
OS01G0169400
I
0.859
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.859
Ca_08824
Cicer arietinum
Ca_08824
I
0.859
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.848
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.848
Cla017388
Citrullus lanatus
Cla017388
I
0.848
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.848
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.848
F775_25656
Aegilops tauschii
F775_25656
I
0.848
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.848
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.848
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.848
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.848
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.848
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.848
cassava12464.valid.m1
Manihot esculenta
cassava12464.valid.m1
I
0.838
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.838
LOB
Arabidopsis thaliana
AT5G63090
D
0.838
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.838
Ca_07463
Cicer arietinum
Ca_07463
I
0.838
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.838
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.838
gene28478-v1.0-hybrid
Fragaria vesca
gene28478-v1.0-hybrid
I
0.838
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.838
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.838
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.838
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.838
29917.m001993
Ricinus communis
29917.m001993
I
0.838
Bra038606
Brassica rapa
Bra038606
I
0.838
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.838
PK21510.1
Cannabis sativa
PK21510.1
I
0.838
POPTR_0001s35280
Populus trichocarpa
POPTR_0001s35280
I
0.828
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.828
Pm015649
Prunus mume
Pm015649
I
0.828
PRUPE_ppa018381mg
Prunus persica
PRUPE_ppa018381mg
I
0.828
MTR_7g033800
Medicago truncatula
MTR_7g033800
I
0.828
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.828
GLYMA19G00390
Glycine max
GLYMA19G00390
I
0.828
PK26472.1
Cannabis sativa
PK26472.1
I
0.828
GLYMA16G07770
Glycine max
GLYMA16G07770
I
0.828
mgf024603m
Mimulus guttatus
mgf024603m
I
0.828
GLYMA05G08870
Glycine max
GLYMA05G08870
I
0.828
Eucgr.J02237
Eucalyptus grandis
Eucgr.J02237
I
0.828
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.828
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.828
SapurV1A.1328s0080
Salix purpurea
SapurV1A.1328s0080
I
0.828
PK18922.1
Cannabis sativa
PK18922.1
I
0.825
Cla010600
Citrullus lanatus
Cla010600
I
0.818
Solyc06g071660.1
Solanum lycopersicum
Solyc06g071660.1
I
0.818
Ca_24372
Cicer arietinum
Ca_24372
I
0.818
Lus10022264.g
Linum usitatissimum
Lus10022264.g
I
0.818
evm.TU.supercontig_108.62
Carica papaya
evm.TU.supercontig_108.62
I
0.818
Aquca_011_00559
Aquilegia coerulea
Aquca_011_00559
I
0.818
GLYMA19G12650
Glycine max
GLYMA19G12650
I
0.818
cassava3724.m1
Manihot esculenta
cassava3724.m1
I
0.818
Cucsa.011300
Cucumis sativus
Cucsa.011300
I
0.818
PGSC0003DMG400027078
Solanum tuberosum
PGSC0003DMG400027078
I
0.818
MTR_6g005070
Medicago truncatula
MTR_6g005070
I
0.808
Gorai.012G063800
Gossypium raimondii
Gorai.012G063800
I
0.808
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.808
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.808
chr2.LjT30P12.80.nc
Lotus japonicus
chr2.LjT30P12.80.nc
I
0.808
LBD25
Vitis vinifera
VIT_14s0066g00680
I
0.808
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.808
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.808
Bra035860
Brassica rapa
Bra035860
I
0.808
PGSC0003DMG400012629
Solanum tuberosum
PGSC0003DMG400012629
I
0.808
TCM_016952
Theobroma cacao
TCM_016952
I
0.808
MDP0000848210
Malus domestica
MDP0000848210
I
0.808
LjSGA_042891.1
Lotus japonicus
LjSGA_042891.1
I
0.808
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.798
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.788
Solyc02g086480.1
Solanum lycopersicum
Solyc02g086480.1
I
0.788
MTR_6g005080
Medicago truncatula
MTR_6g005080
I
0.778
mgf003146m
Mimulus guttatus
mgf003146m
I
0.778
Bo7g085860
Brassica oleracea
Bo7g085860
I
0.768
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.768
Bra025294
Brassica rapa
Bra025294
I
0.768
LBD25
Arabidopsis thaliana
AT3G27650
I
0.758
Thhalv10005120m.g
Eutrema salsugineum
Thhalv10005120m.g
I
0.758
Cla005851
Citrullus lanatus
Cla005851
I
0.758
Bostr.0556s0446
Boechera stricta
Bostr.0556s0446
I
0.758
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.758
Carubv10018238m.g
Capsella rubella
Carubv10018238m.g
I
0.758
Cagra.5575s0004
Capsella grandiflora
Cagra.5575s0004
I
0.758
LBD25
Arabidopsis lyrata
fgenesh2_kg.5__545__AT3G27650.1
I
0.758
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.747
MDP0000273432
Malus domestica
MDP0000273432
I
0.747
mgf014755m
Mimulus guttatus
mgf014755m
I
0.747
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.747
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.747
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.747
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.747
Ca_11161
Cicer arietinum
Ca_11161
I
0.747
Bo2g144870
Brassica oleracea
Bo2g144870
I
0.737
TCM_000560
Theobroma cacao
TCM_000560
I
0.737
Ciclev10017910m.g
Citrus clementina
Ciclev10017910m.g
I
0.737
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.737
Thhalv10019572m.g
Eutrema salsugineum
Thhalv10019572m.g
I
0.737
Cagra.10809s0001
Capsella grandiflora
Cagra.10809s0001
I
0.737
Carubv10020974m.g
Capsella rubella
Carubv10020974m.g
I
0.737
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.737
Bostr.26959s0351
Boechera stricta
Bostr.26959s0351
I
0.737
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.737
Aquca_007_00083
Aquilegia coerulea
Aquca_007_00083
I
0.737
AS2
Arabidopsis lyrata
fgenesh2_kg.2__796__AT1G65620.2
I
0.737
Aquca_058_00006
Aquilegia coerulea
Aquca_058_00006
I
0.737
Bo2g051420
Brassica oleracea
Bo2g051420
I
0.737
cassava32690.m1
Manihot esculenta
cassava32690.m1
I
0.737
Ca_20200
Cicer arietinum
Ca_20200
I
0.737
MDP0000643326
Malus domestica
MDP0000643326
I
0.737
orange1.1g027472m.g
Citrus sinensis
orange1.1g027472m.g
I
0.737
Bo9g008330
Brassica oleracea
Bo9g008330
I
0.737
Bra033019
Brassica rapa
Bra033019
I
0.737
Gorai.007G210500
Gossypium raimondii
Gorai.007G210500
I
0.737
TCM_024217
Theobroma cacao
TCM_024217
I
0.737
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.737
Gorai.011G104600
Gossypium raimondii
Gorai.011G104600
I
0.737
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.737
Bra039072
Brassica rapa
Bra039072
I
0.737
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.737
LBD6
Arabidopsis thaliana
AT1G65620
D
0.737
Bra039733
Brassica rapa
Bra039733
I
0.737
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.737
evm.TU.supercontig_39.110
Carica papaya
evm.TU.supercontig_39.110
I
0.737
cassava1141.valid.m1
Manihot esculenta
cassava1141.valid.m1
I
0.737
29929.m004500
Ricinus communis
29929.m004500
I
0.737
OLONG_009404
Oryza longistaminata
OLONG_009404
I
0.734
Gorai.007G350300
Gossypium raimondii
Gorai.007G350300
I
0.727
SapurV1A.0428s0090
Salix purpurea
SapurV1A.0428s0090
I
0.727
SapurV1A.0164s0090
Salix purpurea
SapurV1A.0164s0090
I
0.727
SapurV1A.0093s0490
Salix purpurea
SapurV1A.0093s0490
I
0.727
SapurV1A.0811s0020
Salix purpurea
SapurV1A.0811s0020
I
0.727
Carubv10026811m.g
Capsella rubella
Carubv10026811m.g
I
0.727
Ciclev10027275m.g
Citrus clementina
Ciclev10027275m.g
I
0.727
SapurV1A.0641s0140
Salix purpurea
SapurV1A.0641s0140
I
0.727
orange1.1g039589m.g
Citrus sinensis
orange1.1g039589m.g
I
0.727
chr2.LjT16G06.10.nd
Lotus japonicus
chr2.LjT16G06.10.nd
I
0.727
cassava16846.m1
Manihot esculenta
cassava16846.m1
I
0.727
Pm026450
Prunus mume
Pm026450
I
0.727
POPTR_0007s11460
Populus trichocarpa
POPTR_0007s11460
I
0.727
MTR_5g017950
Medicago truncatula
MTR_5g017950
I
0.727
POPTR_0008s07930
Populus trichocarpa
POPTR_0008s07930
I
0.727
POPTR_0010s18460
Populus trichocarpa
POPTR_0010s18460
I
0.727
TRIUR3_10339
Triticum urartu
TRIUR3_10339
I
0.727
Cagra.20099s0001
Capsella grandiflora
Cagra.20099s0001
I
0.727
PRUPE_ppa026393mg
Prunus persica
PRUPE_ppa026393mg
I
0.727
MTR_3g073690
Medicago truncatula
MTR_3g073690
I
0.727
GLYMA01G39060
Glycine max
GLYMA01G39060
I
0.727
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.727
GLYMA11G06210
Glycine max
GLYMA11G06210
I
0.727
Bostr.0568s0111
Boechera stricta
Bostr.0568s0111
I
0.727
Cucsa.250570
Cucumis sativus
Cucsa.250570
I
0.727
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.727
Bo2g167820
Brassica oleracea
Bo2g167820
I
0.727
Lus10031191.g
Linum usitatissimum
Lus10031191.g
I
0.717
Si037583m.g
Setaria italica
Si037583m.g
I
0.717
Lus10022463.g
Linum usitatissimum
Lus10022463.g
I
0.717
Lus10016769.g
Linum usitatissimum
Lus10016769.g
I
0.717
GLYMA06G11181
Glycine max
GLYMA06G11181
I
0.717
GRMZM2G079185
Zea mays
GRMZM2G079185
I
0.717
GSMUA_Achr6G04670_001
Musa acuminata
GSMUA_Achr6G04670_001
I
0.717
ASL1
Arabidopsis lyrata
fgenesh2_kg.8__2729__AT5G66870.1
I
0.717
MDP0000562305
Malus domestica
MDP0000562305
I
0.717
POPTR_0005s14150
Populus trichocarpa
POPTR_0005s14150
I
0.717
Sb01g012810
Sorghum bicolor
Sb01g012810
I
0.717
Bra012112
Brassica rapa
Bra012112
I
0.717
gw1.12.172.1
Physcomitrella patens
gw1.12.172.1
I
0.717
cassava32691.m1
Manihot esculenta
cassava32691.m1
I
0.717
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.717
gene24088-v1.0-hybrid
Fragaria vesca
gene24088-v1.0-hybrid
I
0.717
mgf004296m
Mimulus guttatus
mgf004296m
I
0.717
29676.m001633
Ricinus communis
29676.m001633
I
0.717
Lus10013610.g
Linum usitatissimum
Lus10013610.g
I
0.717
Bo7g064360
Brassica oleracea
Bo7g064360
I
0.717
Bo4g151770
Brassica oleracea
Bo4g151770
I
0.707
GLYMA04G11991
Glycine max
GLYMA04G11991
I
0.707
GLYMA07G35000
Glycine max
GLYMA07G35000
I
0.707
OGLUM04G05130
Oryza glumaepatula
OGLUM04G05130
I
0.707
BGIOSGA013249
Oryza indica
BGIOSGA013249
I
0.707
Thhalv10004535m.g
Eutrema salsugineum
Thhalv10004535m.g
I
0.707
LPERR03G21590
Leersia perrieri
LPERR03G21590
I
0.707
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.707
GLYMA09G02510
Glycine max
GLYMA09G02510
I
0.707
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.707
GLYMA16G09720
Glycine max
GLYMA16G09720
I
0.707
OMERI03G24920
Oryza meridionalis
OMERI03G24920
I
0.707
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.707
LPERR03G23450
Leersia perrieri
LPERR03G23450
I
0.707
OPUNC03G25820
Oryza punctata
OPUNC03G25820
I
0.707
Bra032153
Brassica rapa
Bra032153
I
0.707
VIT_16s0022g02050
Vitis vinifera
VIT_16s0022g02050
I
0.707
Cla020438
Citrullus lanatus
Cla020438
I
0.707
Si026864m.g
Setaria italica
Si026864m.g
I
0.707
VIT_07s0197g00020
Vitis vinifera
VIT_07s0197g00020
I
0.707
Solyc02g065150.1
Solanum lycopersicum
Solyc02g065150.1
I
0.707
VIT_00s1247g00010
Vitis vinifera
VIT_00s1247g00010
I
0.707
Gorai.008G073400
Gossypium raimondii
Gorai.008G073400
I
0.707
LBD36
Arabidopsis thaliana
AT5G66870
I
0.707
MDP0000777060
Malus domestica
MDP0000777060
I
0.707
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.707
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.707
ONIVA03G29300
Oryza nivara
ONIVA03G29300
I
0.707
ORUFI03G29410
Oryza rufipogon
ORUFI03G29410
I
0.707
PGSC0003DMG400010023
Solanum tuberosum
PGSC0003DMG400010023
I
0.707
gene30401-v1.0-hybrid
Fragaria vesca
gene30401-v1.0-hybrid
I
0.707
PGSC0003DMG402000764
Solanum tuberosum
PGSC0003DMG402000764
I
0.707
SapurV1A.0085s0450
Salix purpurea
SapurV1A.0085s0450
I
0.707