Cla003499 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla003499 T246326_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.838 0.838
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla003499 LOB 13 111

Links

Other LOB family TFs
Other Citrullus lanatus TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.970
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.879
Si002632m.g Setaria italica Si002632m.g I 0.869
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.869
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.869
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.869
OB01G14220 Oryza brachyantha OB01G14220 I 0.869
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.869
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.869
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.869
Cla019510 Citrullus lanatus Cla019510 I 0.869
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.869
TCM_012190 Theobroma cacao TCM_012190 I 0.869
MDP0000254288 Malus domestica MDP0000254288 I 0.869
MDP0000130659 Malus domestica MDP0000130659 I 0.869
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.869
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.869
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.869
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.869
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.869
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.869
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.869
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.859
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.859
OBART01G04470 Oryza barthii OBART01G04470 I 0.859
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.859
mgf016361m Mimulus guttatus mgf016361m I 0.859
LOB Vitis vinifera VIT_17s0000g09010 I 0.859
30147.m013890 Ricinus communis 30147.m013890 I 0.859
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.859
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.859
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.859
Pm024312 Prunus mume Pm024312 I 0.859
OS01G0169400 Oryza sativa OS01G0169400 I 0.859
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.859
Ca_08824 Cicer arietinum Ca_08824 I 0.859
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.848
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.848
Cla017388 Citrullus lanatus Cla017388 I 0.848
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.848
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.848
F775_25656 Aegilops tauschii F775_25656 I 0.848
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.848
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.848
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.848
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.848
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.848
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.848
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.838
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.838
LOB Arabidopsis thaliana AT5G63090 D 0.838
LOB Arabidopsis lyrata scaffold_802995.1 I 0.838
Ca_07463 Cicer arietinum Ca_07463 I 0.838
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.838
Bo3g104760 Brassica oleracea Bo3g104760 I 0.838
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.838
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.838
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.838
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.838
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.838
29917.m001993 Ricinus communis 29917.m001993 I 0.838
Bra038606 Brassica rapa Bra038606 I 0.838
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.838
PK21510.1 Cannabis sativa PK21510.1 I 0.838
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.828
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.828
Pm015649 Prunus mume Pm015649 I 0.828
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.828
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.828
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.828
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.828
PK26472.1 Cannabis sativa PK26472.1 I 0.828
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.828
mgf024603m Mimulus guttatus mgf024603m I 0.828
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.828
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.828
Bo9g017470 Brassica oleracea Bo9g017470 I 0.828
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.828
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
Cla010600 Citrullus lanatus Cla010600 I 0.818
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.818
Ca_24372 Cicer arietinum Ca_24372 I 0.818
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.818
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.818
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.818
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.818
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.818
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.818
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.818
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.808
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.808
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.808
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.808
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.808
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.808
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.808
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.808
Bra035860 Brassica rapa Bra035860 I 0.808
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.808
TCM_016952 Theobroma cacao TCM_016952 I 0.808
MDP0000848210 Malus domestica MDP0000848210 I 0.808
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.808
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.798
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.788
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.788
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.778
mgf003146m Mimulus guttatus mgf003146m I 0.778
Bo7g085860 Brassica oleracea Bo7g085860 I 0.768
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.768
Bra025294 Brassica rapa Bra025294 I 0.768
LBD25 Arabidopsis thaliana AT3G27650 I 0.758
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.758
Cla005851 Citrullus lanatus Cla005851 I 0.758
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.758
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.758
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.758
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.758
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.758
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
MDP0000273432 Malus domestica MDP0000273432 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
Ca_11161 Cicer arietinum Ca_11161 I 0.747
Bo2g144870 Brassica oleracea Bo2g144870 I 0.737
TCM_000560 Theobroma cacao TCM_000560 I 0.737
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.737
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.737
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.737
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.737
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.737
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.737
Bo2g051420 Brassica oleracea Bo2g051420 I 0.737
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
MDP0000643326 Malus domestica MDP0000643326 I 0.737
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.737
Bo9g008330 Brassica oleracea Bo9g008330 I 0.737
Bra033019 Brassica rapa Bra033019 I 0.737
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.737
TCM_024217 Theobroma cacao TCM_024217 I 0.737
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.737
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.737
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.737
Bra039072 Brassica rapa Bra039072 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
LBD6 Arabidopsis thaliana AT1G65620 D 0.737
Bra039733 Brassica rapa Bra039733 I 0.737
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.737
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.737
29929.m004500 Ricinus communis 29929.m004500 I 0.737
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.734
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.727
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.727
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.727
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.727
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.727
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.727
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.727
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.727
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.727
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.727
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.727
Pm026450 Prunus mume Pm026450 I 0.727
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.727
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.727
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.727
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.727
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.727
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.727
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.727
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.727
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.727
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.727
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.727
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.727
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.727
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.727
Bo2g167820 Brassica oleracea Bo2g167820 I 0.727
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.717
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.717
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.717
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.717
MDP0000562305 Malus domestica MDP0000562305 I 0.717
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.717
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.717
Bra012112 Brassica rapa Bra012112 I 0.717
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.717
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.717
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.717
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.717
mgf004296m Mimulus guttatus mgf004296m I 0.717
29676.m001633 Ricinus communis 29676.m001633 I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
Bo7g064360 Brassica oleracea Bo7g064360 I 0.717
Bo4g151770 Brassica oleracea Bo4g151770 I 0.707
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.707
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.707
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.707
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.707
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.707
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.707
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
Bra032153 Brassica rapa Bra032153 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
Cla020438 Citrullus lanatus Cla020438 I 0.707
Si026864m.g Setaria italica Si026864m.g I 0.707
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.707
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.707
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.707
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.707
LBD36 Arabidopsis thaliana AT5G66870 I 0.707
MDP0000777060 Malus domestica MDP0000777060 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.707
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.707
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.707
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707