Cla005133 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla005133 T246329_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005133 LOB 14 112

Links

Other LOB family TFs
Other Citrullus lanatus TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.929
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.848
Cla005134 Citrullus lanatus Cla005134 N 0.848
mgf022524m Mimulus guttatus mgf022524m N 0.848
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.838
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.828
TCM_043081 Theobroma cacao TCM_043081 I 0.828
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.828
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.828
MDP0000822986 Malus domestica MDP0000822986 I 0.828
TCM_041094 Theobroma cacao TCM_041094 I 0.828
30111.m000703 Ricinus communis 30111.m000703 I 0.828
Pm000938 Prunus mume Pm000938 I 0.828
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.828
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.828
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.828
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.828
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.828
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.828
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.818
MDP0000218986 Malus domestica MDP0000218986 I 0.818
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.818
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.818
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.818
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.818
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.818
MDP0000318244 Malus domestica MDP0000318244 I 0.818
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.818
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.818
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.818
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.818
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.818
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.818
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.818
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.808
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.808
PK23777.1 Cannabis sativa PK23777.1 I 0.808
Ca_14605 Cicer arietinum Ca_14605 I 0.808
Ca_04287 Cicer arietinum Ca_04287 I 0.808
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.808
PK27389.1 Cannabis sativa PK27389.1 I 0.808
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.808
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.808
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.808
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.808
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.808
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.808
Cla000556 Citrullus lanatus Cla000556 I 0.808
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.808
Pm018585 Prunus mume Pm018585 I 0.808
MDP0000319331 Malus domestica MDP0000319331 I 0.808
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.798
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.798
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.798
MDP0000123013 Malus domestica MDP0000123013 I 0.798
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.798
Bo5g008590 Brassica oleracea Bo5g008590 N 0.798
MDP0000151784 Malus domestica MDP0000151784 I 0.798
MDP0000879799 Malus domestica MDP0000879799 N 0.798
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.798
Bra018675 Brassica rapa Bra018675 N 0.798
mgf019622m Mimulus guttatus mgf019622m N 0.788
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.788
Cla020379 Citrullus lanatus Cla020379 I 0.788
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.788
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.788
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.788
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.788
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.788
OBART05G01640 Oryza barthii OBART05G01640 N 0.788
OB05G11740 Oryza brachyantha OB05G11740 I 0.788
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.788
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.788
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.788
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.784
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.778
Ca_02507 Cicer arietinum Ca_02507 N 0.778
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.778
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.778
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.778
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.778
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.778
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.778
Si024430m.g Setaria italica Si024430m.g N 0.778
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.778
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.778
mgf015666m Mimulus guttatus mgf015666m N 0.778
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.778
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.769
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.768
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.768
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.768
Bostr.25219s0157 Boechera stricta Bostr.25219s0157 N 0.768
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.768
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.768
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.768
Bo8g112780 Brassica oleracea Bo8g112780 N 0.768
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.768
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.768
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.768
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.768
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.768
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.762
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.758
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.758
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.758
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.758
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.758
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.758
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.758
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.758
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.758
Bo01039s010 Brassica oleracea Bo01039s010 N 0.758
Bra011942 Brassica rapa Bra011942 N 0.758
Bra031599 Brassica rapa Bra031599 N 0.758
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.755
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.747
LBD11 Arabidopsis thaliana AT2G28500 N 0.747
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.747
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.747
Bo4g165420 Brassica oleracea Bo4g165420 N 0.747
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.747
Bra035698 Brassica rapa Bra035698 N 0.747
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.747
F775_02335 Aegilops tauschii F775_02335 N 0.747
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.745
Bra000491 Brassica rapa Bra000491 N 0.737
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.737
Bo3g040220 Brassica oleracea Bo3g040220 N 0.737
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.737
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.737
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.737
OS03G0287400 Oryza sativa OS03G0287400 N 0.737
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.737
Si037280m.g Setaria italica Si037280m.g N 0.737
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.737
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.737
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.737
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.737
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.737
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.737
OBART03G13260 Oryza barthii OBART03G13260 N 0.737
OB03G23270 Oryza brachyantha OB03G23270 N 0.737
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.737
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.737
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.737
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.737
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.736
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.727
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.727
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.727
VIT_13s0019g03810 Vitis vinifera VIT_13s0019g03810 N 0.727
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.716
GSMUA_Achr4G16790_001 Musa acuminata GSMUA_Achr4G16790_001 N 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
OS05G0123000 Oryza sativa OS05G0123000 I 0.702
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.702
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.702