Cla010600 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla010600 T246344_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.879 0.879
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla010600 LOB 10 108

Links

Other LOB family TFs
Other Citrullus lanatus TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.990
29917.m001993 Ricinus communis 29917.m001993 I 0.960
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.960
Cla017388 Citrullus lanatus Cla017388 I 0.949
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.949
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.949
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.949
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.949
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.949
Pm015649 Prunus mume Pm015649 I 0.949
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.949
PK26472.1 Cannabis sativa PK26472.1 I 0.949
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.939
Ca_24372 Cicer arietinum Ca_24372 I 0.939
MDP0000848210 Malus domestica MDP0000848210 I 0.939
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.939
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.939
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.939
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.929
TCM_016952 Theobroma cacao TCM_016952 I 0.929
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.929
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.929
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.929
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.919
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.919
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.909
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.903
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.899
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.899
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.899
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.899
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.889
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.889
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.889
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.889
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.889
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.889
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.879
LOB Arabidopsis lyrata scaffold_802995.1 I 0.879
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.879
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.879
TCM_012190 Theobroma cacao TCM_012190 I 0.879
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.879
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.879
Cla019510 Citrullus lanatus Cla019510 I 0.879
LOB Arabidopsis thaliana AT5G63090 D 0.879
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.879
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.879
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.879
MDP0000130659 Malus domestica MDP0000130659 I 0.879
LOB Vitis vinifera VIT_17s0000g09010 I 0.879
30147.m013890 Ricinus communis 30147.m013890 I 0.879
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.879
Bra038606 Brassica rapa Bra038606 I 0.879
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.879
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.879
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.879
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.879
MDP0000254288 Malus domestica MDP0000254288 I 0.879
Bo3g104760 Brassica oleracea Bo3g104760 I 0.879
mgf024603m Mimulus guttatus mgf024603m I 0.869
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.869
Bo9g017470 Brassica oleracea Bo9g017470 I 0.869
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.869
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.869
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.869
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.869
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.869
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.869
Ca_08824 Cicer arietinum Ca_08824 I 0.869
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.869
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.869
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.869
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.869
LBD25 Arabidopsis thaliana AT3G27650 I 0.869
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.869
Pm024312 Prunus mume Pm024312 I 0.869
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.869
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.859
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.859
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.859
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.859
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.859
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.859
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.859
Si002632m.g Setaria italica Si002632m.g I 0.859
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.859
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.859
mgf003146m Mimulus guttatus mgf003146m I 0.859
OB01G14220 Oryza brachyantha OB01G14220 I 0.859
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.859
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.859
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.859
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.859
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.859
Bra035860 Brassica rapa Bra035860 I 0.848
Bra025294 Brassica rapa Bra025294 I 0.848
F775_25656 Aegilops tauschii F775_25656 I 0.848
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.848
Ca_07463 Cicer arietinum Ca_07463 I 0.848
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.848
PK21510.1 Cannabis sativa PK21510.1 I 0.848
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.848
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.848
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.848
OBART01G04470 Oryza barthii OBART01G04470 I 0.848
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.848
OS01G0169400 Oryza sativa OS01G0169400 I 0.848
mgf016361m Mimulus guttatus mgf016361m I 0.838
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.838
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.838
Bo9g008330 Brassica oleracea Bo9g008330 I 0.838
Bo7g085860 Brassica oleracea Bo7g085860 I 0.838
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.838
Bra039072 Brassica rapa Bra039072 I 0.838
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.828
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.828
Cla003499 Citrullus lanatus Cla003499 I 0.818
Bra033019 Brassica rapa Bra033019 I 0.818
Bo2g144870 Brassica oleracea Bo2g144870 I 0.818
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.803
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.796
PK18922.1 Cannabis sativa PK18922.1 I 0.789
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.788
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.788
F775_33210 Aegilops tauschii F775_33210 I 0.781
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.776
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.768
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.768
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.753
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.750
PK29334.1 Cannabis sativa PK29334.1 I 0.750
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.747
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.738
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.737
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.737
PK13228.1 Cannabis sativa PK13228.1 I 0.734
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.733
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.727
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.727
mgf014755m Mimulus guttatus mgf014755m I 0.727
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.727
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.722
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.717
MDP0000643326 Malus domestica MDP0000643326 I 0.717
PK21617.1 Cannabis sativa PK21617.1 I 0.717
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.717
MDP0000273432 Malus domestica MDP0000273432 I 0.717
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.717
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.717
AS2 Vitis vinifera VIT_00s0340g00090 I 0.717
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.717
Ca_20200 Cicer arietinum Ca_20200 I 0.717
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.717
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.717
Cla005851 Citrullus lanatus Cla005851 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
LBD6 Arabidopsis thaliana AT1G65620 D 0.707
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.707
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.707
Bo2g051420 Brassica oleracea Bo2g051420 I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.707
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.707
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.707
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.707
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.707
Bra039733 Brassica rapa Bra039733 I 0.707
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.707
TCM_024217 Theobroma cacao TCM_024217 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.700