Cla013598 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla013598 T246345_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.727 0.727
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013598 LOB 7 105

Links

Other LOB family TFs
Other Citrullus lanatus TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.139480 Cucumis sativus Cucsa.139480 N 0.889
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.859
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.859
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.859
29729.m002278 Ricinus communis 29729.m002278 I 0.859
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.859
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.859
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.859
MDP0000265429 Malus domestica MDP0000265429 I 0.859
MDP0000861160 Malus domestica MDP0000861160 I 0.848
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.848
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.848
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.848
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.848
Pm018982 Prunus mume Pm018982 I 0.848
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.848
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.848
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.848
TCM_042447 Theobroma cacao TCM_042447 I 0.848
MDP0000155138 Malus domestica MDP0000155138 I 0.848
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.848
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.848
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.848
MDP0000194766 Malus domestica MDP0000194766 I 0.848
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.838
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.838
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.838
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.838
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.838
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.838
Cla007354 Citrullus lanatus Cla007354 I 0.838
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.838
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.838
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.838
Pm000193 Prunus mume Pm000193 I 0.838
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.838
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.838
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.838
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.838
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.828
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.828
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.828
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.828
TCM_042212 Theobroma cacao TCM_042212 I 0.828
Ca_13388 Cicer arietinum Ca_13388 I 0.828
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.828
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.828
Si024229m.g Setaria italica Si024229m.g I 0.828
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.828
OS05G0346800 Oryza sativa OS05G0346800 I 0.828
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.828
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.828
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.828
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.828
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.828
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.828
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.828
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.828
OB05G20740 Oryza brachyantha OB05G20740 I 0.828
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.828
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.828
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.828
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.828
mgf018189m Mimulus guttatus mgf018189m I 0.818
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.818
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.818
OBART05G12620 Oryza barthii OBART05G12620 I 0.818
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.818
Bra018335 Brassica rapa Bra018335 I 0.818
Bo4g059700 Brassica oleracea Bo4g059700 I 0.818
LBD12 Arabidopsis thaliana AT2G30130 I 0.818
Bo4g170770 Brassica oleracea Bo4g170770 I 0.818
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.818
Bra021612 Brassica rapa Bra021612 I 0.818
mgf019461m Mimulus guttatus mgf019461m I 0.818
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.818
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.818
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.818
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.818
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.818
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.818
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.818
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.818
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.817
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.813
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.808
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.808
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.808
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.808
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.808
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.808
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.808
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.808
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.798
Ca_12450 Cicer arietinum Ca_12450 I 0.798
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.798
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.798
PK17019.1 Cannabis sativa PK17019.1 I 0.794
TRIUR3_27421 Triticum urartu TRIUR3_27421 I 0.793
F775_24149 Aegilops tauschii F775_24149 I 0.793
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.793
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.788
Bo3g024350 Brassica oleracea Bo3g024350 I 0.788
Ca_08998 Cicer arietinum Ca_08998 I 0.788
Bra022780 Brassica rapa Bra022780 I 0.788
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.788
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.787
PK09808.1 Cannabis sativa PK09808.1 I 0.786
ORGLA01G0366500 Oryza glaberrima ORGLA01G0366500 I 0.780
Si026864m.g Setaria italica Si026864m.g I 0.778
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.778
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.778
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.778
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.778
Thhalv10017267m.g Eutrema salsugineum Thhalv10017267m.g I 0.777
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.768
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.768
ONIVA08G12870 Oryza nivara ONIVA08G12870 I 0.765
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.758
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.758
Cla005598 Citrullus lanatus Cla005598 I 0.758
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.758
LjSGA_010274.2 Lotus japonicus LjSGA_010274.2 N 0.750
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.747
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
F775_08326 Aegilops tauschii F775_08326 I 0.747
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.747
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.747
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.747
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.747
PK11564.1 Cannabis sativa PK11564.1 I 0.747
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.747
Sb08g000575 Sorghum bicolor Sb08g000575 I 0.742
PK21617.1 Cannabis sativa PK21617.1 I 0.739
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.737
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.737
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.737
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.737
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.737
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.737
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.737
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.737
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.737
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.737
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.737
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.737
MDP0000284409 Malus domestica MDP0000284409 I 0.737
30169.m006340 Ricinus communis 30169.m006340 I 0.737
MDP0000121203 Malus domestica MDP0000121203 I 0.737
Pm011040 Prunus mume Pm011040 I 0.737
TCM_029315 Theobroma cacao TCM_029315 I 0.737
Ca_13575 Cicer arietinum Ca_13575 I 0.737
MDP0000268890 Malus domestica MDP0000268890 I 0.737
Cla013678 Citrullus lanatus Cla013678 I 0.737
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.737
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.737
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.737
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.737
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.737
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.737
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.737
cassava2872.m1 Manihot esculenta cassava2872.m1 I 0.737
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.737
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.737
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.737
PK29334.1 Cannabis sativa PK29334.1 I 0.734
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.727
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.727
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.727
PK24688.1 Cannabis sativa PK24688.1 I 0.727
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.727
Ca_06548 Cicer arietinum Ca_06548 I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.727
OB12G10480 Oryza brachyantha OB12G10480 I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.727
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.727
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.727
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.727
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.727
Bra014907 Brassica rapa Bra014907 I 0.727
OB11G10200 Oryza brachyantha OB11G10200 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.727
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.727
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.727
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.727
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.727
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.727
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.727
mgf022958m Mimulus guttatus mgf022958m I 0.727
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.727
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.727
LPERR12G00030 Leersia perrieri LPERR12G00030 I 0.727
ORGLA11G0005800 Oryza glaberrima ORGLA11G0005800 I 0.717
OS11G0106900 Oryza sativa OS11G0106900 I 0.717
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.717
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.717
OPUNC12G00430 Oryza punctata OPUNC12G00430 I 0.717
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.717
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.717
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.717
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.717
mgf026046m Mimulus guttatus mgf026046m I 0.717
BGIOSGA034653 Oryza indica BGIOSGA034653 I 0.717
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.717
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.717
Cla009336 Citrullus lanatus Cla009336 I 0.717
Si011647m.g Setaria italica Si011647m.g I 0.717
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.717
OS12G0106200 Oryza sativa OS12G0106200 I 0.717
Bo7g041000 Brassica oleracea Bo7g041000 I 0.717
BGIOSGA036857 Oryza indica BGIOSGA036857 I 0.717
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.712
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.707
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.707
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
LPERR11G00440 Leersia perrieri LPERR11G00440 I 0.707
OGLUM12G00350 Oryza glumaepatula OGLUM12G00350 I 0.707
ORGLA12G0001500 Oryza glaberrima ORGLA12G0001500 I 0.707
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707