Cla015094 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla015094 T246348_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.727 0.727
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.727 0.727
LBD16
M00870_2.00
Arabidopsis thaliana
DNHHYVCGG

CCGBRDDNH
PBM
Franco-Zorrilla et al.(2014)
LBD16
0.707 0.707
LBD16
M06958_2.00
Arabidopsis thaliana
SCGGAAAWNVCGSMR

YKSCGBNWTTTCCGS
Dap-seq
OMalley et al.(2016)
ASL18_col_a
0.707 0.707
LBD16
M06959_2.00
Arabidopsis thaliana
SCDBDWTTYVCGSHDN

NHDSCGBRAAWHVHGS
Dap-seq
OMalley et al.(2016)
ASL18_colamp_a
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla015094 LOB 12 111

Links

Other LOB family TFs
Other Citrullus lanatus TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
LBD16 Arabidopsis thaliana AT2G42430 D 0.707
LBD18 Arabidopsis thaliana AT2G45420 D 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.717
Cla006087 Citrullus lanatus Cla006087 I 0.828
Ca_12214 Cicer arietinum Ca_12214 I 0.818
Ca_07763 Cicer arietinum Ca_07763 I 0.828
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.727
VIT_07s0005g03020 Vitis vinifera VIT_07s0005g03020 I 0.838
TRIUR3_07751 Triticum urartu TRIUR3_07751 I 0.747
TRIUR3_01477 Triticum urartu TRIUR3_01477 I 0.707
Traes_6DL_850266B2A Triticum aestivum Traes_6DL_850266B2A I 0.707
Traes_6BS_179B5B6E1 Triticum aestivum Traes_6BS_179B5B6E1 I 0.727
Traes_6AS_4EEA3E388 Triticum aestivum Traes_6AS_4EEA3E388 I 0.707
Cla006088 Citrullus lanatus Cla006088 I 0.707
Cla007068 Citrullus lanatus Cla007068 I 0.717
Pm017936 Prunus mume Pm017936 I 0.717
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.818
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.707
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.869
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.869
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.727
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.737
30174.m008898 Ricinus communis 30174.m008898 I 0.727
28428.m000040 Ricinus communis 28428.m000040 I 0.869
Pm020628 Prunus mume Pm020628 I 0.848
Pm020627 Prunus mume Pm020627 I 0.798
Traes_6AL_D6045E37C Triticum aestivum Traes_6AL_D6045E37C I 0.707
Traes_4DS_11C3B0459 Triticum aestivum Traes_4DS_11C3B0459 I 0.747
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.707
PRUPE_ppa025889mg Prunus persica PRUPE_ppa025889mg I 0.859
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.707
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.798
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.717
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.848
PGSC0003DMG400009716 Solanum tuberosum PGSC0003DMG400009716 I 0.818
OS08G0563400 Oryza sativa OS08G0563400 I 0.778
OS03G0246900 Oryza sativa OS03G0246900 I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.798
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.798
Sb04g037550 Sorghum bicolor Sb04g037550 I 0.717
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.768
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.778
Traes_4BS_5D9291539 Triticum aestivum Traes_4BS_5D9291539 I 0.747
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.778
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.768
TCM_004103 Theobroma cacao TCM_004103 I 0.811
Solyc09g066270.2 Solanum lycopersicum Solyc09g066270.2 I 0.818
Si040019m.g Setaria italica Si040019m.g I 0.798
Si019578m.g Setaria italica Si019578m.g I 0.707
Si015156m.g Setaria italica Si015156m.g I 0.768
LBD16 Arabidopsis lyrata scaffold_403099.1 I 0.707
OS02G0820500 Oryza sativa OS02G0820500 I 0.727
Cucsa.388160 Cucumis sativus Cucsa.388160 I 0.980
LjT35F15.90.nd Lotus japonicus LjT35F15.90.nd I 0.848
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.727
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.848
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.859
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.859
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.727
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.848
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.818
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.717
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.808
Gorai.004G073200 Gossypium raimondii Gorai.004G073200 I 0.788
Pavir.Aa00097 Panicum virgatum Pavir.Aa00097 I 0.717
Pavir.Fa00011 Panicum virgatum Pavir.Fa00011 I 0.768
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.707
Thhalv10017158m.g Eutrema salsugineum Thhalv10017158m.g I 0.717
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.808
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.727
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.717
SapurV1A.0006s0970 Salix purpurea SapurV1A.0006s0970 I 0.859
Pavir.J39638 Panicum virgatum Pavir.J39638 I 0.717
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.707
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.758
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.798
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.798
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.828
gene08254-v1.0-hybrid Fragaria vesca gene08254-v1.0-hybrid I 0.778
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.727
Cagra.0686s0036 Capsella grandiflora Cagra.0686s0036 I 0.818
Bostr.25993s0538 Boechera stricta Bostr.25993s0538 I 0.717
Bostr.25993s0537 Boechera stricta Bostr.25993s0537 I 0.737
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.727
Bostr.20903s0070 Boechera stricta Bostr.20903s0070 I 0.818
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.707
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.828
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.798
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.717
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.717
Cagra.2636s0029 Capsella grandiflora Cagra.2636s0029 I 0.717
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.707
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.848
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.859
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.727
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.848
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.848
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.727
Carubv10025548m.g Capsella rubella Carubv10025548m.g I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.727
Carubv10019250m.g Capsella rubella Carubv10019250m.g I 0.818
mgf020773m Mimulus guttatus mgf020773m I 0.848
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.768
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.707
GLYMA03G31860 Glycine max GLYMA03G31860 I 0.838
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.707
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.717
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.808
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.727
F775_22967 Aegilops tauschii F775_22967 I 0.747
F775_02052 Aegilops tauschii F775_02052 I 0.737
BRADI3G55680 Brachypodium distachyon BRADI3G55680 I 0.707
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.859
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.869
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.828
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.717
GSMUA_Achr1G06580_001 Musa acuminata GSMUA_Achr1G06580_001 I 0.788
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.717
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.747
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.788
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.707
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.707
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.798
GRMZM2G075499 Zea mays GRMZM2G075499 I 0.717
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.788
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.758
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.707
Bo4g016000 Brassica oleracea Bo4g016000 I 0.717
Bo3g036030 Brassica oleracea Bo3g036030 I 0.707
Bo3g036000 Brassica oleracea Bo3g036000 I 0.720
BGIOSGA026473 Oryza indica BGIOSGA026473 I 0.778
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.798
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.707
BGIOSGA005344 Oryza indica BGIOSGA005344 I 0.727
LBD29 Arabidopsis thaliana AT3G58190 I 0.808
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.707
Bo4g024620 Brassica oleracea Bo4g024620 I 0.727
Bo4g108600 Brassica oleracea Bo4g108600 I 0.798
Bo4g191530 Brassica oleracea Bo4g191530 I 0.717
Bra040311 Brassica rapa Bra040311 I 0.717
Bra016877 Brassica rapa Bra016877 I 0.707
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.758
Bra014581 Brassica rapa Bra014581 I 0.798
Bra004910 Brassica rapa Bra004910 I 0.727
Bra004693 Brassica rapa Bra004693 I 0.717
Bra000257 Brassica rapa Bra000257 I 0.707
Bo8g092560 Brassica oleracea Bo8g092560 I 0.808
Bo4g195520 Brassica oleracea Bo4g195520 I 0.717
AC149818.2_FG009 Zea mays AC149818.2_FG009 I 0.747
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.717
ORUFI08G26340 Oryza rufipogon ORUFI08G26340 I 0.778
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.798
ONIVA02G40360 Oryza nivara ONIVA02G40360 I 0.727
OMERI08G18670 Oryza meridionalis OMERI08G18670 I 0.778
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.798
OMERI02G35350 Oryza meridionalis OMERI02G35350 I 0.727
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.737
OLONG_010223 Oryza longistaminata OLONG_010223 I 0.778
OGLUM08G25340 Oryza glumaepatula OGLUM08G25340 I 0.778
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.707
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.737
ONIVA09G01330 Oryza nivara ONIVA09G01330 I 0.778
OPUNC02G34750 Oryza punctata OPUNC02G34750 I 0.717
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.798
ORUFI02G39110 Oryza rufipogon ORUFI02G39110 I 0.727
ORGLA08G0192400 Oryza glaberrima ORGLA08G0192400 I 0.778
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.798
ORGLA02G0327800 Oryza glaberrima ORGLA02G0327800 I 0.727
OPUNC08G21770 Oryza punctata OPUNC08G21770 I 0.778
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.798
OGLUM02G38740 Oryza glumaepatula OGLUM02G38740 I 0.727
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.798
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.798
OB03G13890 Oryza brachyantha OB03G13890 I 0.798
OB02G44330 Oryza brachyantha OB02G44330 I 0.717
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.859
MTR_1g070205 Medicago truncatula MTR_1g070205 I 0.848
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.707
MLOC_61947 Hordeum vulgare MLOC_61947 I 0.707
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.778
MLOC_52276 Hordeum vulgare MLOC_52276 I 0.747
LPERR02G31040 Leersia perrieri LPERR02G31040 I 0.727
OB08G30680 Oryza brachyantha OB08G30680 I 0.798
OBART03G03830 Oryza barthii OBART03G03830 I 0.798
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.707
OBART08G23860 Oryza barthii OBART08G23860 I 0.778
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.778
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.788
OBART03G10450 Oryza barthii OBART03G10450 I 0.707
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.778
LBD14 Arabidopsis thaliana AT2G31310 N 0.727
LBD17 Arabidopsis thaliana AT2G42440 N 0.747
Thhalv10017299m.g Eutrema salsugineum Thhalv10017299m.g N 0.747
Thhalv10017903m.g Eutrema salsugineum Thhalv10017903m.g N 0.747
Bra016876 Brassica rapa Bra016876 N 0.747
MLOC_10783 Hordeum vulgare MLOC_10783 N 0.707
Bo4g052270 Brassica oleracea Bo4g052270 N 0.737
fgenesh1_pg.C_scaffold_4002383 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002383 N 0.737
Traes_4DL_05F87867C Triticum aestivum Traes_4DL_05F87867C N 0.707
Cagra.6952s0010 Capsella grandiflora Cagra.6952s0010 N 0.727
Traes_4AL_BB3F89030 Triticum aestivum Traes_4AL_BB3F89030 N 0.717
Bra021737 Brassica rapa Bra021737 N 0.737
Traes_4AL_3BA1D51E2 Triticum aestivum Traes_4AL_3BA1D51E2 N 0.707
Bra007385 Brassica rapa Bra007385 N 0.778
LBD14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4001244 N 0.737
Bo4g191540 Brassica oleracea Bo4g191540 N 0.747
Bostr.24513s0089 Boechera stricta Bostr.24513s0089 N 0.727
Carubv10025067m.g Capsella rubella Carubv10025067m.g N 0.717