CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm010668
(
Prunus mume
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
Pm010668
T246369_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.885
0.885
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.795
0.795
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm010668
LOB
1
78
MQASEEEKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLALAQA
Links
Other
LOB
family TFs
Other
Prunus mume
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0005s10050
Populus trichocarpa
POPTR_0005s10050
I
0.923
PRUPE_ppa012322mg
Prunus persica
PRUPE_ppa012322mg
I
0.923
gene20083-v1.0-hybrid
Fragaria vesca
gene20083-v1.0-hybrid
I
0.923
MDP0000121203
Malus domestica
MDP0000121203
I
0.923
PK17019.1
Cannabis sativa
PK17019.1
I
0.912
LjSGA_079580.1.1
Lotus japonicus
LjSGA_079580.1.1
I
0.904
SapurV1A.0059s0540
Salix purpurea
SapurV1A.0059s0540
I
0.897
AMTR_s00032p00142260
Amborella trichopoda
AMTR_s00032p00142260
I
0.895
orange1.1g044340m.g
Citrus sinensis
orange1.1g044340m.g
I
0.885
Ciclev10006113m.g
Citrus clementina
Ciclev10006113m.g
I
0.885
Solyc11g045530.1
Solanum lycopersicum
Solyc11g045530.1
I
0.885
PGSC0003DMG400021204
Solanum tuberosum
PGSC0003DMG400021204
I
0.872
POPTR_0007s08290
Populus trichocarpa
POPTR_0007s08290
I
0.872
OS03G0659700
Oryza sativa
OS03G0659700
I
0.851
PK09808.1
Cannabis sativa
PK09808.1
I
0.804
Sb05g000550
Sorghum bicolor
Sb05g000550
I
0.800
SELMODRAFT_49085
Selaginella moellendorffii
SELMODRAFT_49085
I
0.795
Pavir.Ia01095
Panicum virgatum
Pavir.Ia01095
I
0.782
Pavir.Ib04170
Panicum virgatum
Pavir.Ib04170
I
0.782
MDP0000265429
Malus domestica
MDP0000265429
I
0.769
SapurV1A.0061s0670
Salix purpurea
SapurV1A.0061s0670
I
0.769
Si024229m.g
Setaria italica
Si024229m.g
I
0.756
Ciclev10029962m.g
Citrus clementina
Ciclev10029962m.g
I
0.756
Cucsa.239660
Cucumis sativus
Cucsa.239660
I
0.756
Sb09g016240
Sorghum bicolor
Sb09g016240
I
0.756
GRMZM2G044150
Zea mays
GRMZM2G044150
I
0.744
PGSC0003DMG400025400
Solanum tuberosum
PGSC0003DMG400025400
I
0.744
Si011647m.g
Setaria italica
Si011647m.g
I
0.744
evm.TU.supercontig_2.374
Carica papaya
evm.TU.supercontig_2.374
I
0.744
OLONG_023571
Oryza longistaminata
OLONG_023571
I
0.737
Eucgr.B03991
Eucalyptus grandis
Eucgr.B03991
I
0.731
mgf018189m
Mimulus guttatus
mgf018189m
I
0.731
LBD3
Arabidopsis thaliana
AT1G16530
I
0.731
PDK_20s1810211g001
Phoenix dactylifera
PDK_20s1810211g001
I
0.731
SapurV1A.0042s0120
Salix purpurea
SapurV1A.0042s0120
I
0.731
Aquca_118_00035
Aquilegia coerulea
Aquca_118_00035
I
0.727
PDK_20s1376911g004
Phoenix dactylifera
PDK_20s1376911g004
I
0.722
evm.TU.contig_40341.1
Carica papaya
evm.TU.contig_40341.1
I
0.718
GLYMA11G29450
Glycine max
GLYMA11G29450
I
0.718
Ca_13388
Cicer arietinum
Ca_13388
I
0.718
Gorai.011G290800
Gossypium raimondii
Gorai.011G290800
I
0.718
Gorai.011G051200
Gossypium raimondii
Gorai.011G051200
I
0.717
SapurV1A.0094s0480
Salix purpurea
SapurV1A.0094s0480
I
0.717
POPTR_0001s11610
Populus trichocarpa
POPTR_0001s11610
I
0.717
evm.TU.supercontig_192.6
Carica papaya
evm.TU.supercontig_192.6
I
0.717
LBD4
Vitis vinifera
VIT_00s0125g00290
I
0.717
chr4.CM0229.130.nc
Lotus japonicus
chr4.CM0229.130.nc
I
0.717
POPTR_0003s14880
Populus trichocarpa
POPTR_0003s14880
I
0.717
TCM_029315
Theobroma cacao
TCM_029315
I
0.717
cassava27818.m1
Manihot esculenta
cassava27818.m1
I
0.717
GLYMA15G13410
Glycine max
GLYMA15G13410
I
0.707
MTR_4g083680
Medicago truncatula
MTR_4g083680
I
0.707
GLYMA20G02850
Glycine max
GLYMA20G02850
I
0.707
Gorai.009G149900
Gossypium raimondii
Gorai.009G149900
I
0.707
mgf022958m
Mimulus guttatus
mgf022958m
I
0.707
Ca_06548
Cicer arietinum
Ca_06548
I
0.707
TCM_032557
Theobroma cacao
TCM_032557
I
0.707
orange1.1g031034m.g
Citrus sinensis
orange1.1g031034m.g
I
0.707
Ciclev10016993m.g
Citrus clementina
Ciclev10016993m.g
I
0.707
Lus10018275.g
Linum usitatissimum
Lus10018275.g
I
0.707
Lus10040638.g
Linum usitatissimum
Lus10040638.g
I
0.707
Traes_4AL_AD9C8CB77
Triticum aestivum
Traes_4AL_AD9C8CB77
I
0.705
ORUFI05G01750
Oryza rufipogon
ORUFI05G01750
I
0.702
OS05G0123000
Oryza sativa
OS05G0123000
I
0.702
BGIOSGA018905
Oryza indica
BGIOSGA018905
I
0.702