Pm010668 (Prunus mume)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pm010668 T246369_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD4
M02261_2.00
Arabidopsis thaliana
VDNVCGSNNN

NNNSCGBNHB
PBM
Weirauch et al.(2014)
pTH7515
0.885 0.885
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.795 0.795
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm010668 LOB 1 78

Links

Other LOB family TFs
Other Prunus mume TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.923
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.923
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.923
MDP0000121203 Malus domestica MDP0000121203 I 0.923
PK17019.1 Cannabis sativa PK17019.1 I 0.912
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.904
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.897
AMTR_s00032p00142260 Amborella trichopoda AMTR_s00032p00142260 I 0.895
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.885
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.885
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.885
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.872
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.872
OS03G0659700 Oryza sativa OS03G0659700 I 0.851
PK09808.1 Cannabis sativa PK09808.1 I 0.804
Sb05g000550 Sorghum bicolor Sb05g000550 I 0.800
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.795
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.782
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.782
MDP0000265429 Malus domestica MDP0000265429 I 0.769
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.769
Si024229m.g Setaria italica Si024229m.g I 0.756
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.756
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.756
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.756
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.744
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.744
Si011647m.g Setaria italica Si011647m.g I 0.744
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.744
OLONG_023571 Oryza longistaminata OLONG_023571 I 0.737
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.731
mgf018189m Mimulus guttatus mgf018189m I 0.731
LBD3 Arabidopsis thaliana AT1G16530 I 0.731
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.731
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.731
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.727
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.722
evm.TU.contig_40341.1 Carica papaya evm.TU.contig_40341.1 I 0.718
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.718
Ca_13388 Cicer arietinum Ca_13388 I 0.718
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.718
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.717
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.717
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.717
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.717
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.717
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.717
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.717
TCM_029315 Theobroma cacao TCM_029315 I 0.717
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.717
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.707
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.707
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.707
mgf022958m Mimulus guttatus mgf022958m I 0.707
Ca_06548 Cicer arietinum Ca_06548 I 0.707
TCM_032557 Theobroma cacao TCM_032557 I 0.707
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.707
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.707
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.707
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.705
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.702
OS05G0123000 Oryza sativa OS05G0123000 I 0.702
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.702