29917.m001993 (Ricinus communis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 29917.m001993 T246420_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.899 0.899
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29917.m001993 LOB 12 110

Links

Other LOB family TFs
Other Ricinus communis TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 1.000
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.990
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.990
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.990
PK26472.1 Cannabis sativa PK26472.1 I 0.990
Pm015649 Prunus mume Pm015649 I 0.990
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.990
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.980
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.970
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.970
MDP0000848210 Malus domestica MDP0000848210 I 0.970
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.970
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.960
Cla017388 Citrullus lanatus Cla017388 I 0.960
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.960
TCM_016952 Theobroma cacao TCM_016952 I 0.960
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.960
Cla010600 Citrullus lanatus Cla010600 I 0.960
Ca_24372 Cicer arietinum Ca_24372 I 0.960
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.949
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.949
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.949
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.939
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.939
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.939
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.939
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.939
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.929
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.929
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.929
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.929
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.919
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.909
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.909
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.909
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.909
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.909
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.909
LOB Vitis vinifera VIT_17s0000g09010 I 0.909
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.909
30147.m013890 Ricinus communis 30147.m013890 I 0.909
TCM_012190 Theobroma cacao TCM_012190 I 0.909
MDP0000130659 Malus domestica MDP0000130659 I 0.909
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.909
MDP0000254288 Malus domestica MDP0000254288 I 0.909
Cla019510 Citrullus lanatus Cla019510 I 0.909
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.909
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.909
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.899
LOB Arabidopsis thaliana AT5G63090 D 0.899
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.899
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.899
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.899
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.899
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.899
Pm024312 Prunus mume Pm024312 I 0.899
Si002632m.g Setaria italica Si002632m.g I 0.899
Ca_08824 Cicer arietinum Ca_08824 I 0.899
LOB Arabidopsis lyrata scaffold_802995.1 I 0.899
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.899
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.899
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.899
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.899
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.899
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.899
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.899
OB01G14220 Oryza brachyantha OB01G14220 I 0.899
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.899
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.899
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.899
Bo3g104760 Brassica oleracea Bo3g104760 I 0.899
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.899
Bra038606 Brassica rapa Bra038606 I 0.899
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.899
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.899
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.899
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.899
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.889
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.889
Bo9g017470 Brassica oleracea Bo9g017470 I 0.889
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.889
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.889
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.889
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.889
mgf024603m Mimulus guttatus mgf024603m I 0.889
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.889
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.889
OS01G0169400 Oryza sativa OS01G0169400 I 0.889
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.889
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.889
OBART01G04470 Oryza barthii OBART01G04470 I 0.889
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.879
Ca_07463 Cicer arietinum Ca_07463 I 0.879
F775_25656 Aegilops tauschii F775_25656 I 0.879
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.879
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.879
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.869
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.869
LBD25 Arabidopsis thaliana AT3G27650 I 0.869
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.869
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.869
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.869
Bra035860 Brassica rapa Bra035860 I 0.869
PK21510.1 Cannabis sativa PK21510.1 I 0.869
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.859
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.859
mgf003146m Mimulus guttatus mgf003146m I 0.859
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.859
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.859
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.848
Bo7g085860 Brassica oleracea Bo7g085860 I 0.848
mgf016361m Mimulus guttatus mgf016361m I 0.848
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.848
Bra039072 Brassica rapa Bra039072 I 0.848
Bra025294 Brassica rapa Bra025294 I 0.848
Bo9g008330 Brassica oleracea Bo9g008330 I 0.848
PK18922.1 Cannabis sativa PK18922.1 I 0.842
Cla003499 Citrullus lanatus Cla003499 I 0.838
Bo2g144870 Brassica oleracea Bo2g144870 I 0.818
Bra033019 Brassica rapa Bra033019 I 0.818
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.798
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.798
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.780
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.776
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
PK29334.1 Cannabis sativa PK29334.1 I 0.750
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.747
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.737
Cla005851 Citrullus lanatus Cla005851 I 0.737
Ca_20200 Cicer arietinum Ca_20200 I 0.737
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.737
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.737
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.737
MDP0000273432 Malus domestica MDP0000273432 I 0.737
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.737
mgf014755m Mimulus guttatus mgf014755m I 0.737
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.737
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.737
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.737
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.737
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.734
GLYMA01G32340 Glycine max GLYMA01G32340 N 0.732
MDP0000643326 Malus domestica MDP0000643326 I 0.727
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.727
Bra039733 Brassica rapa Bra039733 I 0.727
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.727
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.727
29929.m004500 Ricinus communis 29929.m004500 I 0.727
TCM_024217 Theobroma cacao TCM_024217 I 0.727
Bo2g051420 Brassica oleracea Bo2g051420 I 0.727
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.727
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.727
LBD6 Arabidopsis thaliana AT1G65620 D 0.727
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.727
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.727
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.725
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.717
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.717
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.717
OB05G24560 Oryza brachyantha OB05G24560 I 0.717
OS05G0417000 Oryza sativa OS05G0417000 I 0.717
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.717
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.717
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.717
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.717
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.717
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.717
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.717
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.717
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.717
F775_21760 Aegilops tauschii F775_21760 I 0.717
MTR_3g073690 Medicago truncatula MTR_3g073690 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.707
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.707
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.707