29957.m001411 (Ricinus communis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 29957.m001411 T246422_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.869 0.869
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.869 0.869
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29957.m001411 LOB 46 144

Links

Other LOB family TFs
Other Ricinus communis TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK21617.1 Cannabis sativa PK21617.1 I 0.957
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.919
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.919
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.919
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.919
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.909
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.909
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.909
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.909
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.909
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.909
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.909
LBD15 Arabidopsis thaliana AT2G40470 I 0.909
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.909
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.899
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.899
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.899
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.899
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.899
TCM_045438 Theobroma cacao TCM_045438 I 0.899
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.899
TCM_042262 Theobroma cacao TCM_042262 I 0.899
Bo3g034980 Brassica oleracea Bo3g034980 I 0.899
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.899
mgf011471m Mimulus guttatus mgf011471m I 0.899
Bra000188 Brassica rapa Bra000188 I 0.899
29729.m002335 Ricinus communis 29729.m002335 I 0.899
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.899
Bra016992 Brassica rapa Bra016992 I 0.899
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.889
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.889
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.889
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.889
Bo4g190210 Brassica oleracea Bo4g190210 I 0.889
Bra004572 Brassica rapa Bra004572 I 0.889
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.889
PK17217.1 Cannabis sativa PK17217.1 I 0.889
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
Bo4g012620 Brassica oleracea Bo4g012620 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.889
Bra021627 Brassica rapa Bra021627 I 0.879
Bo4g172950 Brassica oleracea Bo4g172950 I 0.879
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.879
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.879
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.879
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.879
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.879
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.879
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.879
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.869
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.869
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.869
MDP0000278334 Malus domestica MDP0000278334 I 0.869
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.869
Cla007391 Citrullus lanatus Cla007391 I 0.869
Ca_04126 Cicer arietinum Ca_04126 I 0.869
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.869
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
Bo4g059520 Brassica oleracea Bo4g059520 I 0.869
Bra018320 Brassica rapa Bra018320 I 0.869
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
LBD13 Arabidopsis thaliana AT2G30340 D 0.869
Bo4g190140 Brassica oleracea Bo4g190140 I 0.868
MDP0000167580 Malus domestica MDP0000167580 I 0.860
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.859
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.859
Pm000277 Prunus mume Pm000277 I 0.859
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.859
PK05388.1 Cannabis sativa PK05388.1 I 0.857
PK03716.1 Cannabis sativa PK03716.1 I 0.853
OB05G14280 Oryza brachyantha OB05G14280 I 0.851
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.848
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.848
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.848
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
mgf020556m Mimulus guttatus mgf020556m I 0.848
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.848
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.843
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.838
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.838
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.838
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.836
Pm019028 Prunus mume Pm019028 I 0.836
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.828
F775_25790 Aegilops tauschii F775_25790 I 0.828
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.828
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.828
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.828
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.828
OBART05G04570 Oryza barthii OBART05G04570 I 0.828
Ca_12420 Cicer arietinum Ca_12420 I 0.828
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.828
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.828
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.828
OS05G0165450 Oryza sativa OS05G0165450 I 0.828
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.828
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.828
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.821
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.818
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.818
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.818
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.818
OS01G0825000 Oryza sativa OS01G0825000 I 0.818
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.818
Si004575m.g Setaria italica Si004575m.g I 0.818
OB01G44400 Oryza brachyantha OB01G44400 I 0.818
OBART01G35680 Oryza barthii OBART01G35680 I 0.818
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.818
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.818
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.818
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.818
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.818
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.818
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.818
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.808
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.808
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.808
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.808
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.808
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.808
F775_52636 Aegilops tauschii F775_52636 I 0.808
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.798
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.788
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.788
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.788
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.787
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.737
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.712
Cla006731 Citrullus lanatus Cla006731 I 0.709
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.707
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.707
mgf026046m Mimulus guttatus mgf026046m I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
PK29334.1 Cannabis sativa PK29334.1 I 0.703
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702