30147.m013890 (Ricinus communis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 30147.m013890 T246426_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.970 0.970
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.768 0.768
gw1.238.28.1
M02262_2.00
Physcomitrella patens
NNNNNVNGSN

NSCNBNNNNN
PBM
Weirauch et al.(2014)
pTH8459
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30147.m013890 LOB 10 108

Links

Other LOB family TFs
Other Ricinus communis TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O9_10610 Exophiala aquamarina A1O9_10610 N 0.000
CADAFLAG00010199 Aspergillus flavus CADAFLAG00010199 N 0.000
CHGG_05256 Chaetomium globosum CHGG_05256 N 0.000
COCC4DRAFT_137441 Bipolaris maydis COCC4DRAFT_137441 N 0.000
COCCADRAFT_105405 Bipolaris zeicola COCCADRAFT_105405 N 0.000
COCSADRAFT_324435 Bipolaris sorokiniana COCSADRAFT_324435 N 0.000
COCVIDRAFT_95708 Bipolaris victoriae COCVIDRAFT_95708 N 0.000
e_gw1.9.820.1 Cochliobolus heterostrophus C5 e_gw1.9.820.1 N 0.000
PV04_00858 Capronia semiimmersa PV04_00858 N 0.000
PV05_03077 Exophiala xenobiotica PV05_03077 I 0.000
PV05_09226 Exophiala xenobiotica PV05_09226 I 0.000
PV06_08173 Exophiala oligosperma PV06_08173 N 0.000
PV11_05379 Exophiala sideris PV11_05379 N 0.000
SCHCODRAFT_110416 Schizophyllum commune SCHCODRAFT_110416 N 0.000
SETTUDRAFT_160687 Setosphaeria turcica SETTUDRAFT_160687 N 0.000
TRIVIDRAFT_205900 Trichoderma virens TRIVIDRAFT_205900 N 0.000