CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava11118.m1
(
Manihot esculenta
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
cassava11118.m1
T246433_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD23
M06964_2.00
Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN
Dap-seq
OMalley et al.(2016)
LBD23_col_a
0.737
0.737
LBD23
M06965_2.00
Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH
Dap-seq
OMalley et al.(2016)
LBD23_colamp_a
0.737
0.737
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava11118.m1
LOB
5
103
RCAACKYLRRRCPSDCIFSPYFPSNDPQRFACVHKIYGASNVGKMLQQLPTHQRVQAANSLFYEAQCRIQDPVYGCVGIISLLHQQIHIAQNQLAKTQA
Links
Other
LOB
family TFs
Other
Manihot esculenta
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy