cassava15468.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava15468.m1 T246439_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.713 0.713
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.713 0.713
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava15468.m1 LOB 7 101

Links

Other LOB family TFs
Other Manihot esculenta TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I 0.862
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I 0.862
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I 0.851
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I 0.840
TCM_042730 Theobroma cacao TCM_042730 I 0.838
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N 0.830
cassava34632.m1 Manihot esculenta cassava34632.m1 N 0.828
Ciclev10033354m.g Citrus clementina Ciclev10033354m.g I 0.819
PRUPE_ppa018815mg Prunus persica PRUPE_ppa018815mg N 0.819
Pm018835 Prunus mume Pm018835 N 0.819
MDP0000123797 Malus domestica MDP0000123797 N 0.809
30143.m001171 Ricinus communis 30143.m001171 N 0.808
LBD33 Vitis vinifera VIT_13s0019g02060 N 0.798
SapurV1A.0281s0190 Salix purpurea SapurV1A.0281s0190 I 0.798
MDP0000133936 Malus domestica MDP0000133936 N 0.778
MTR_5g080470 Medicago truncatula MTR_5g080470 N 0.777
GLYMA14G07260 Glycine max GLYMA14G07260 N 0.777
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I 0.766
Cucsa.165150 Cucumis sativus Cucsa.165150 N 0.755
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N 0.755
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N 0.755
Ca_16122 Cicer arietinum Ca_16122 N 0.755
Aquca_034_00400 Aquilegia coerulea Aquca_034_00400 I 0.755
Lus10033873.g Linum usitatissimum Lus10033873.g I 0.755
Carubv10002921m.g Capsella rubella Carubv10002921m.g N 0.755
Gorai.004G073300 Gossypium raimondii Gorai.004G073300 I 0.745
Cla004059 Citrullus lanatus Cla004059 N 0.745
LBD33 Arabidopsis thaliana AT5G06080 N 0.745
POPTR_0002s04200 Populus trichocarpa POPTR_0002s04200 I 0.745
MTR_7g096610 Medicago truncatula MTR_7g096610 I 0.745
LPERR03G03470 Leersia perrieri LPERR03G03470 I 0.745
GLYMA10G04050 Glycine max GLYMA10G04050 I 0.745
Bo9g176580 Brassica oleracea Bo9g176580 N 0.745
mgf020773m Mimulus guttatus mgf020773m I 0.745
cassava41632.m1 Manihot esculenta cassava41632.m1 I 0.745
GRMZM2G092542 Zea mays GRMZM2G092542 I 0.745
GLYMA13G18210 Glycine max GLYMA13G18210 I 0.745
TCM_004103 Theobroma cacao TCM_004103 I 0.737
GLYMA02G41710 Glycine max GLYMA02G41710 N 0.737
gene08253-v1.0-hybrid Fragaria vesca gene08253-v1.0-hybrid I 0.734
mgf020558m Mimulus guttatus mgf020558m N 0.734
Ciclev10023341m.g Citrus clementina Ciclev10023341m.g I 0.734
orange1.1g027399m.g Citrus sinensis orange1.1g027399m.g I 0.734
cassava40664.m1 Manihot esculenta cassava40664.m1 I 0.734
Aquca_017_00693 Aquilegia coerulea Aquca_017_00693 I 0.734
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.734
GLYMA19G34600 Glycine max GLYMA19G34600 I 0.734
Eucgr.B01529 Eucalyptus grandis Eucgr.B01529 I 0.734
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
Gorai.004G220000 Gossypium raimondii Gorai.004G220000 I 0.723
Traes_4DL_43D63ABE3 Triticum aestivum Traes_4DL_43D63ABE3 I 0.723
Gorai.001G251700 Gossypium raimondii Gorai.001G251700 I 0.723
Aquca_003_00139 Aquilegia coerulea Aquca_003_00139 N 0.723
Traes_4AL_CAF4E16B5 Triticum aestivum Traes_4AL_CAF4E16B5 I 0.723
PRUPE_ppa019939mg Prunus persica PRUPE_ppa019939mg I 0.723
Cucsa.053450 Cucumis sativus Cucsa.053450 I 0.723
MLOC_10784 Hordeum vulgare MLOC_10784 I 0.723
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.723
GSMUA_Achr11G02110_001 Musa acuminata GSMUA_Achr11G02110_001 I 0.723
Traes_4BL_A4D0F4AD6 Triticum aestivum Traes_4BL_A4D0F4AD6 I 0.723
Pm020627 Prunus mume Pm020627 I 0.723
BRADI1G75110 Brachypodium distachyon BRADI1G75110 I 0.723
MDP0000254224 Malus domestica MDP0000254224 I 0.723
OGLUM03G03710 Oryza glumaepatula OGLUM03G03710 I 0.719
OLONG_020841 Oryza longistaminata OLONG_020841 I 0.719
Thhalv10015772m.g Eutrema salsugineum Thhalv10015772m.g N 0.719
TCM_005496 Theobroma cacao TCM_005496 I 0.717
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.713
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.713
Pm020628 Prunus mume Pm020628 I 0.713
Cla007068 Citrullus lanatus Cla007068 I 0.713
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.713
30174.m008898 Ricinus communis 30174.m008898 I 0.713
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.713
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.713
GSMUA_Achr1G01360_001 Musa acuminata GSMUA_Achr1G01360_001 I 0.713
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.713
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.713
LBD29 Arabidopsis lyrata fgenesh2_kg.5__2263__AT3G58190.1 I 0.713
Bo8g092560 Brassica oleracea Bo8g092560 I 0.713
Bra040311 Brassica rapa Bra040311 I 0.713
Thhalv10006226m.g Eutrema salsugineum Thhalv10006226m.g I 0.713
GSMUA_AchrUn_randomG07730_001 Musa acuminata GSMUA_AchrUn_randomG07730_001 I 0.713
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.713
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.713
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.713
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.713
Lus10004707.g Linum usitatissimum Lus10004707.g N 0.713
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.713
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.713
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.713
OB08G30680 Oryza brachyantha OB08G30680 I 0.713
evm.TU.supercontig_50.42 Carica papaya evm.TU.supercontig_50.42 I 0.707
Bostr.13129s0366 Boechera stricta Bostr.13129s0366 N 0.707
BGIOSGA011445 Oryza indica BGIOSGA011445 I 0.707
OBART03G03830 Oryza barthii OBART03G03830 I 0.707
OMERI07G01660 Oryza meridionalis OMERI07G01660 I 0.707
ONIVA03G03580 Oryza nivara ONIVA03G03580 I 0.707
Pavir.Ia04220 Panicum virgatum Pavir.Ia04220 I 0.707
OB03G13890 Oryza brachyantha OB03G13890 I 0.707
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.707
GSMUA_Achr10G06700_001 Musa acuminata GSMUA_Achr10G06700_001 I 0.707
Pavir.Ib00283 Panicum virgatum Pavir.Ib00283 I 0.707
ORGLA03G0035900 Oryza glaberrima ORGLA03G0035900 I 0.707
OPUNC03G03520 Oryza punctata OPUNC03G03520 I 0.707
Gorai.007G144500 Gossypium raimondii Gorai.007G144500 I 0.707
Ca_12214 Cicer arietinum Ca_12214 I 0.707
28428.m000040 Ricinus communis 28428.m000040 I 0.707
Sb01g046990 Sorghum bicolor Sb01g046990 I 0.707
Si040019m.g Setaria italica Si040019m.g I 0.707
OS03G0149100 Oryza sativa OS03G0149100 I 0.707
ORUFI03G03550 Oryza rufipogon ORUFI03G03550 I 0.707
Lus10000613.g Linum usitatissimum Lus10000613.g I 0.707
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.702
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.702
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.702
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.702
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.702
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.702
OB03G20590 Oryza brachyantha OB03G20590 I 0.702
OBART03G10450 Oryza barthii OBART03G10450 I 0.702
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.702
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.702
Bo4g108600 Brassica oleracea Bo4g108600 I 0.702
Bo4g195520 Brassica oleracea Bo4g195520 I 0.702
Bra004910 Brassica rapa Bra004910 I 0.702
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.702
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.702
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.702
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.702
Bo4g024620 Brassica oleracea Bo4g024620 I 0.702
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.702
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.702
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.702
OS03G0246900 Oryza sativa OS03G0246900 I 0.702
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.702
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.702
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.702
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.702
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.702