cassava16668.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava16668.m1 T246442_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16668.m1 LOB 38 84

Links

Other LOB family TFs
Other Manihot esculenta TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.851
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.851
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.851
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.851
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.851
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.851
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.851
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.830
Bo01039s010 Brassica oleracea Bo01039s010 N 0.830
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.830
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.830
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.830
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.830
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.830
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.830
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.830
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.830
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.830
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.830
Pm018585 Prunus mume Pm018585 I 0.830
Bra035698 Brassica rapa Bra035698 N 0.830
Pm000938 Prunus mume Pm000938 I 0.830
Bra011942 Brassica rapa Bra011942 N 0.830
Ca_14605 Cicer arietinum Ca_14605 I 0.830
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.830
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.830
PK27389.1 Cannabis sativa PK27389.1 I 0.830
Bo4g165420 Brassica oleracea Bo4g165420 N 0.830
Cla005134 Citrullus lanatus Cla005134 N 0.809
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.809
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.809
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.809
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.809
TCM_043081 Theobroma cacao TCM_043081 I 0.809
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.809
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.809
MDP0000822986 Malus domestica MDP0000822986 I 0.809
Ca_04287 Cicer arietinum Ca_04287 I 0.809
orange1.1g047530m.g Citrus sinensis orange1.1g047530m.g I 0.809
mgf022524m Mimulus guttatus mgf022524m N 0.809
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.809
MDP0000879799 Malus domestica MDP0000879799 N 0.809
Cla000556 Citrullus lanatus Cla000556 I 0.809
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.809
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.809
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.809
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.809
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.809
LBD11 Arabidopsis thaliana AT2G28500 N 0.809
PK23777.1 Cannabis sativa PK23777.1 I 0.809
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.809
Bo3g040220 Brassica oleracea Bo3g040220 N 0.809
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.809
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.809
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.809
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.809
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.809
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.809
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.809
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.809
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.809
MDP0000318244 Malus domestica MDP0000318244 I 0.787
MDP0000151784 Malus domestica MDP0000151784 I 0.787
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.787
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.787
Bra000491 Brassica rapa Bra000491 N 0.787
Bo5g008590 Brassica oleracea Bo5g008590 N 0.787
Bo8g112780 Brassica oleracea Bo8g112780 N 0.787
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.787
Bra018675 Brassica rapa Bra018675 N 0.787
Bra031599 Brassica rapa Bra031599 N 0.787
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.787
Gorai.004G023900 Gossypium raimondii Gorai.004G023900 N 0.787
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.787
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.787
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.787
MDP0000123013 Malus domestica MDP0000123013 I 0.787
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.787
MDP0000218986 Malus domestica MDP0000218986 I 0.787
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.787
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.787
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.787
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.787
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.787
mgf019622m Mimulus guttatus mgf019622m N 0.766
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.766
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.766
mgf015666m Mimulus guttatus mgf015666m N 0.766
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.766
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.766
Si037280m.g Setaria italica Si037280m.g N 0.766
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.766
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.766
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.766
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.766
OBART05G01640 Oryza barthii OBART05G01640 N 0.745
OBART03G13260 Oryza barthii OBART03G13260 N 0.745
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.745
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.745
OB05G11740 Oryza brachyantha OB05G11740 I 0.745
OB03G23270 Oryza brachyantha OB03G23270 N 0.745
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.745
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.745
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.745
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.745
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.745
OS03G0287400 Oryza sativa OS03G0287400 N 0.745
Ca_02507 Cicer arietinum Ca_02507 N 0.745
Cucsa.207390 Cucumis sativus Cucsa.207390 N 0.745
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.745
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.745
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.745
Cla005133 Citrullus lanatus Cla005133 N 0.745
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.745
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.745
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.723
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.723
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.723
Traes_4BL_97EDABD02 Triticum aestivum Traes_4BL_97EDABD02 N 0.723
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.723
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.723
Si024430m.g Setaria italica Si024430m.g N 0.723
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.723
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.723
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.723
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.723
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.723
F775_02335 Aegilops tauschii F775_02335 N 0.723
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.723
LPERR03G11720 Leersia perrieri LPERR03G11720 N 0.702
BRADI1G65760 Brachypodium distachyon BRADI1G65760 N 0.702
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.702
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.702
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.702
cassava41200.m1 Manihot esculenta cassava41200.m1 N 0.702
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.702
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.702
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.702
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.702