cassava16840.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava16840.m1 T246443_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD6
M06955_2.00
Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN

NHDYCKCCGYHDHHNCCGSCG
Dap-seq
OMalley et al.(2016)
AS2_col_a
0.778 0.778
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH

DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16840.m1 LOB 7 105

Links

Other LOB family TFs
Other Manihot esculenta TFs

211 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB59 Arabidopsis thaliana AT5G59780 D 0.000
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.000
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.000
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.000
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.000
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.000
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.000
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.000
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.000
Ca_02593 Cicer arietinum Ca_02593 I 0.000
Cla008413 Citrullus lanatus Cla008413 I 0.000
Cla013488 Citrullus lanatus Cla013488 I 0.000
Pm000809 Prunus mume Pm000809 I 0.000
29788.m000340 Ricinus communis 29788.m000340 I 0.000
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.000
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.000
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.000
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.000
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.000
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.000
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.000
Sb05g027360 Sorghum bicolor Sb05g027360 I 0.000
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.000
Si023104m.g Setaria italica Si023104m.g I 0.000
Si026803m.g Setaria italica Si026803m.g I 0.000
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.000
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.000
TCM_041904 Theobroma cacao TCM_041904 I 0.000
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.000
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.000
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.000
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.000
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.000
mgf020363m Mimulus guttatus mgf020363m I 0.000
mgf025691m Mimulus guttatus mgf025691m I 0.000
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.000
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.000
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.000
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.000
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.000
Pavir.J11826 Panicum virgatum Pavir.J11826 I 0.000
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.000
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I 0.000
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.000
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.000
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I 0.000
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.000
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.000
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.000
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.000
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.000
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I 0.000
Aquca_013_00356 Aquilegia coerulea Aquca_013_00356 I 0.000
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.000
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.000
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.000
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.000
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.000
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.000
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.000
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.000
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.000
Lus10009037.g Linum usitatissimum Lus10009037.g I 0.000
MDP0000143156 Malus domestica MDP0000143156 I 0.000
MDP0000177010 Malus domestica MDP0000177010 I 0.000
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.000
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.000
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.000
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.000
GLYMA11G15180 Glycine max GLYMA11G15180 I 0.000
GLYMA12G07110 Glycine max GLYMA12G07110 I 0.000
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.000
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.000
GLYMA16G31280 Glycine max GLYMA16G31280 I 0.000
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.000
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.000
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.000
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.000
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.000
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.000
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.000
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.000
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.000
F775_29427 Aegilops tauschii F775_29427 I 0.000
F775_28589 Aegilops tauschii F775_28589 I 0.000
F775_23572 Aegilops tauschii F775_23572 I 0.000
AMTR_s01267p00006490 Amborella trichopoda AMTR_s01267p00006490 I 0.000
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.000
MYB28 Arabidopsis thaliana AT5G61420 I 0.000
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.000
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.000
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.000
Bo2g025410 Brassica oleracea Bo2g025410 I 0.000
Bo3g130340 Brassica oleracea Bo3g130340 I 0.000
Bo9g140750 Brassica oleracea Bo9g140750 I 0.000
Bra002533 Brassica rapa Bra002533 I 0.000
Bra006694 Brassica rapa Bra006694 I 0.000
Bra018223 Brassica rapa Bra018223 I 0.000
Bra020289 Brassica rapa Bra020289 I 0.000
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.000
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.000
F775_06315 Aegilops tauschii F775_06315 I 0.000
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.000
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.000
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.000
OB01G54920 Oryza brachyantha OB01G54920 I 0.000
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.000
OB11G27690 Oryza brachyantha OB11G27690 I 0.000
MYBAS1 Oryza sativa OS11G0700500 I 0.000
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.000
OB12G23080 Oryza brachyantha OB12G23080 I 0.000
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.000
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.000
OBART01G45730 Oryza barthii OBART01G45730 I 0.000
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.000
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.000
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.000
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.000
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.000
MYBAS2 Oryza sativa OS12G0567300 I 0.000
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.000
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.000
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.000
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.000
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.000
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.000
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.000
Sb05g027370 Sorghum bicolor Sb05g027370 N 0.000
PDK_20s1741841g001 Phoenix dactylifera PDK_20s1741841g001 N 0.000
Bo3g017760 Brassica oleracea Bo3g017760 N 0.000
Thhalv10022197m.g Eutrema salsugineum Thhalv10022197m.g N 0.000
PK18646.1 Cannabis sativa PK18646.1 N 0.000
PK15577.1 Cannabis sativa PK15577.1 N 0.000
PK07010.1 Cannabis sativa PK07010.1 N 0.000
PGSC0003DMG402010883 Solanum tuberosum PGSC0003DMG402010883 N 0.000
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.000
PGSC0003DMG400030397 Solanum tuberosum PGSC0003DMG400030397 N 0.000
PK00358.1 Cannabis sativa PK00358.1 N 0.000
cassava13590.valid.m1 Manihot esculenta cassava13590.valid.m1 N 0.000
Solyc06g005310.2 Solanum lycopersicum Solyc06g005310.2 N 0.000
Pavir.Ea03006 Panicum virgatum Pavir.Ea03006 N 0.000
cassava29437.valid.m1 Manihot esculenta cassava29437.valid.m1 N 0.000
MLOC_71332 Hordeum vulgare MLOC_71332 N 0.000
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N 0.000
Ca_16710 Cicer arietinum Ca_16710 N 0.000
Aquca_027_00267 Aquilegia coerulea Aquca_027_00267 N 0.000
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N 0.000
Carubv10027237m.g Capsella rubella Carubv10027237m.g N 0.000
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.000
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.000
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N 0.000
fgenesh2_kg.397__1__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.397__1__AT3G24310.1 N 0.000
Traes_2DL_77F235694 Triticum aestivum Traes_2DL_77F235694 N 0.000
Traes_2AL_E2F8D46CE Triticum aestivum Traes_2AL_E2F8D46CE N 0.000
Traes_1BS_060C24872 Triticum aestivum Traes_1BS_060C24872 N 0.000
Lus10040861.g Linum usitatissimum Lus10040861.g N 0.000
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.000
Solyc06g075660.2 Solanum lycopersicum Solyc06g075660.2 N 0.000
VIT_11s0016g05650 Vitis vinifera VIT_11s0016g05650 N 0.000