cassava2716.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava2716.m1 T246455_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2716.m1 LOB 17 115

Links

Other LOB family TFs
Other Manihot esculenta TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28694.m000665 Ricinus communis 28694.m000665 N 0.970
cassava34925.m1 Manihot esculenta cassava34925.m1 N 0.970
cassava34926.m1 Manihot esculenta cassava34926.m1 N 0.970
MDP0000257227 Malus domestica MDP0000257227 N 0.909
POPTR_0003s04520 Populus trichocarpa POPTR_0003s04520 N 0.909
Pm013344 Prunus mume Pm013344 N 0.909
POPTR_0001s20110 Populus trichocarpa POPTR_0001s20110 N 0.899
Gorai.011G064500 Gossypium raimondii Gorai.011G064500 N 0.899
SapurV1A.0697s0010 Salix purpurea SapurV1A.0697s0010 N 0.889
Cucsa.360530 Cucumis sativus Cucsa.360530 N 0.889
TCM_029052 Theobroma cacao TCM_029052 N 0.889
Cla015827 Citrullus lanatus Cla015827 N 0.889
PGSC0003DMG400004880 Solanum tuberosum PGSC0003DMG400004880 N 0.879
Solyc06g062630.2 Solanum lycopersicum Solyc06g062630.2 N 0.871
gene23043-v1.0-hybrid Fragaria vesca gene23043-v1.0-hybrid N 0.848
TCM_029050 Theobroma cacao TCM_029050 N 0.848
GLYMA07G01170 Glycine max GLYMA07G01170 N 0.848
Lus10003789.g Linum usitatissimum Lus10003789.g N 0.848
Lus10002513.g Linum usitatissimum Lus10002513.g N 0.828
Ca_10077 Cicer arietinum Ca_10077 N 0.828
MTR_8g017090 Medicago truncatula MTR_8g017090 N 0.828
GLYMA08G20550 Glycine max GLYMA08G20550 N 0.828
chr3.CM0049.30.nd Lotus japonicus chr3.CM0049.30.nd N 0.828
evm.TU.supercontig_25.41 Carica papaya evm.TU.supercontig_25.41 N 0.828
Bo1g134830 Brassica oleracea Bo1g134830 N 0.798
Bra021513 Brassica rapa Bra021513 N 0.798
Bo5g132010 Brassica oleracea Bo5g132010 N 0.788
Carubv10014142m.g Capsella rubella Carubv10014142m.g N 0.788
mgf019664m Mimulus guttatus mgf019664m N 0.788
LBD22 Arabidopsis thaliana AT3G13850 N 0.778
LBD22 Arabidopsis lyrata fgenesh2_kg.3__1489__AT3G13850.1 N 0.778
Bostr.28625s0323 Boechera stricta Bostr.28625s0323 N 0.778
Cagra.0736s0021 Capsella grandiflora Cagra.0736s0021 N 0.778
Thhalv10021306m.g Eutrema salsugineum Thhalv10021306m.g N 0.758
Bra027392 Brassica rapa Bra027392 N 0.714