cassava28672.m1 (Manihot esculenta)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 cassava28672.m1 T246458_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LBD19
M06960_2.00
Arabidopsis thaliana
CCKKAAAWHMMGSND

HNSCKKDWTTTMMGG
Dap-seq
OMalley et al.(2016)
LBD19_col_a
0.828 0.828
LBD19
M06961_2.00
Arabidopsis thaliana
WWYCCGG

CCGGRWW
Dap-seq
OMalley et al.(2016)
LBD19_colamp_a
0.828 0.828
LBD18
M06962_2.00
Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN

NHNNYKSCDBDWTYYCCGS
Dap-seq
OMalley et al.(2016)
LBD18_col_a
0.798 0.798
LBD18
M06963_2.00
Arabidopsis thaliana
CDBDWTTTMHGSHRN

NYDSCDKAAAWHVHG
Dap-seq
OMalley et al.(2016)
LBD18_colamp_a
0.798 0.798
LBD30
M01066_2.00
Arabidopsis thaliana
BVWWWHVNGG

CCNBDWWWBV
PBM
Sullivan et al.(2014)
pTH7467
0.758 0.758
LBD30
M01067_2.00
Arabidopsis thaliana
VWWWNVNGGD

HCCNBNWWWB
PBM
Sullivan et al.(2014)
pTH7616
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava28672.m1 LOB 10 109

Links

Other LOB family TFs
Other Manihot esculenta TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_04528 Aegilops tauschii F775_04528 I 0.727
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.838
Aquca_034_00401 Aquilegia coerulea Aquca_034_00401 I 0.717
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.848
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.808
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.737
Al_scaffold_0004_3226 Arabidopsis lyrata Al_scaffold_0004_3226 I 0.818
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.798
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.717
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.758
scaffold_403397.1 Arabidopsis lyrata scaffold_403397.1 I 0.753
LBD18 Arabidopsis thaliana AT2G45420 D 0.798
LBD19 Arabidopsis thaliana AT2G45410 D 0.828
LBD20 Arabidopsis thaliana AT3G03760 I 0.717
LBD31 Arabidopsis thaliana AT4G00210 I 0.778
LBD30 Arabidopsis thaliana AT4G00220 D 0.758
Bostr.14547s0030 Boechera stricta Bostr.14547s0030 I 0.798
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.758
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.717
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.798
Bostr.25993s0234 Boechera stricta Bostr.25993s0234 I 0.828
BRADI3G12550 Brachypodium distachyon BRADI3G12550 I 0.707
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.838
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.788
Bo3g036000 Brassica oleracea Bo3g036000 I 0.710
Bo4g195520 Brassica oleracea Bo4g195520 I 0.798
Bo9g002160 Brassica oleracea Bo9g002160 I 0.758
Bo4g024620 Brassica oleracea Bo4g024620 I 0.798
Bo4g195510 Brassica oleracea Bo4g195510 I 0.798
Bo4g024610 Brassica oleracea Bo4g024610 I 0.788
Bo2g097560 Brassica oleracea Bo2g097560 I 0.768
Bo1g153580 Brassica oleracea Bo1g153580 I 0.717
Bo9g002150 Brassica oleracea Bo9g002150 I 0.747
Bra037323 Brassica rapa Bra037323 I 0.758
Bra008514 Brassica rapa Bra008514 I 0.768
Bra040312 Brassica rapa Bra040312 I 0.798
Bra040311 Brassica rapa Bra040311 I 0.798
Bra037322 Brassica rapa Bra037322 I 0.747
Bra036436 Brassica rapa Bra036436 I 0.717
Bra004910 Brassica rapa Bra004910 I 0.788
Bra004908 Brassica rapa Bra004908 I 0.778
PK23185.1 Cannabis sativa PK23185.1 I 0.717
PK25573.1 Cannabis sativa PK25573.1 I 0.899
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.717
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.758
Cagra.1261s0013 Capsella grandiflora Cagra.1261s0013 I 0.808
Cagra.0698s0022 Capsella grandiflora Cagra.0698s0022 I 0.838
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.798
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.758
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.717
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.798
Carubv10025477m.g Capsella rubella Carubv10025477m.g I 0.838
Carubv10002489m.g Capsella rubella Carubv10002489m.g I 0.798
evm.TU.supercontig_50.43 Carica papaya evm.TU.supercontig_50.43 I 0.717
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.727
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.919
Ca_12213 Cicer arietinum Ca_12213 I 0.727
Ca_20429 Cicer arietinum Ca_20429 I 0.798
Ca_20428 Cicer arietinum Ca_20428 I 0.758
Ca_19598 Cicer arietinum Ca_19598 I 0.859
Cla021625 Citrullus lanatus Cla021625 I 0.737
Cla007069 Citrullus lanatus Cla007069 I 0.889
Cla002965 Citrullus lanatus Cla002965 I 0.727
Cla007068 Citrullus lanatus Cla007068 I 0.828
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.727
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.838
Ciclev10024416m.g Citrus clementina Ciclev10024416m.g I 0.707
Ciclev10022291m.g Citrus clementina Ciclev10022291m.g I 0.828
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.727
orange1.1g041368m.g Citrus sinensis orange1.1g041368m.g I 0.791
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.838
orange1.1g040761m.g Citrus sinensis orange1.1g040761m.g I 0.707
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.727
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.828
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.778
Cucsa.338130 Cucumis sativus Cucsa.338130 I 0.717
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.828
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.737
Eucgr.E01415 Eucalyptus grandis Eucgr.E01415 I 0.848
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.798
Thhalv10001778m.g Eutrema salsugineum Thhalv10001778m.g I 0.788
Thhalv10028924m.g Eutrema salsugineum Thhalv10028924m.g I 0.788
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.747
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.717
gene24461-v1.0-hybrid Fragaria vesca gene24461-v1.0-hybrid I 0.707
gene08250-v1.0-hybrid Fragaria vesca gene08250-v1.0-hybrid I 0.717
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.798
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.949
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.768
GLYMA10G04040 Glycine max GLYMA10G04040 I 0.727
GLYMA03G31830 Glycine max GLYMA03G31830 I 0.727
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.909
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.798
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.788
GLYMA13G18191 Glycine max GLYMA13G18191 I 0.758
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.758
GLYMA19G34590 Glycine max GLYMA19G34590 I 0.737
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.919
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.828
Gorai.007G346200 Gossypium raimondii Gorai.007G346200 I 0.727
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.828
Gorai.008G114300 Gossypium raimondii Gorai.008G114300 I 0.869
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.737
Gorai.001G251600 Gossypium raimondii Gorai.001G251600 I 0.737
Gorai.004G219900 Gossypium raimondii Gorai.004G219900 I 0.717
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.919
Gorai.004G073400 Gossypium raimondii Gorai.004G073400 I 0.737
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.828
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.848
LPERR08G20530 Leersia perrieri LPERR08G20530 I 0.707
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.889
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.808
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.747
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.768
MDP0000131964 Malus domestica MDP0000131964 I 0.717
MDP0000254224 Malus domestica MDP0000254224 I 0.737
MDP0000429067 Malus domestica MDP0000429067 I 0.909
MDP0000145761 Malus domestica MDP0000145761 I 0.727
MDP0000322059 Malus domestica MDP0000322059 I 0.727
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.838
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.970
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.828
cassava15612.m1 Manihot esculenta cassava15612.m1 I 0.707
cassava15337.m1 Manihot esculenta cassava15337.m1 I 0.727
cassava25975.m1 Manihot esculenta cassava25975.m1 I 0.727
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.758
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.848
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.737
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.879
MTR_7g096530 Medicago truncatula MTR_7g096530 I 0.727
mgf006429m Mimulus guttatus mgf006429m I 0.727
mgf020735m Mimulus guttatus mgf020735m I 0.879
GSMUA_AchrUn_randomG23710_001 Musa acuminata GSMUA_AchrUn_randomG23710_001 I 0.717
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.848
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.838
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.707
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.838
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.818
OBART03G10450 Oryza barthii OBART03G10450 I 0.848
OB03G20590 Oryza brachyantha OB03G20590 I 0.737
OB10G12360 Oryza brachyantha OB10G12360 I 0.788
OB08G30680 Oryza brachyantha OB08G30680 I 0.707
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.768
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.848
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.848
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.768
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.768
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.848
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.822
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.848
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.768
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.848
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.768
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.768
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.848
OS10G0162600 Oryza sativa OS10G0162600 I 0.768
OS03G0246900 Oryza sativa OS03G0246900 I 0.848
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.788
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.798
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.788
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.848
PDK_20s1428661g002 Phoenix dactylifera PDK_20s1428661g002 I 0.707
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.717
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.724
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.737
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.727
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.716
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.727
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.727
POPTR_0002s04210 Populus trichocarpa POPTR_0002s04210 I 0.717
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.737
POPTR_0002s14980 Populus trichocarpa POPTR_0002s14980 I 0.862
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.929
POPTR_0013s06070 Populus trichocarpa POPTR_0013s06070 I 0.707
POPTR_0005s24320 Populus trichocarpa POPTR_0005s24320 I 0.707
Pm017935 Prunus mume Pm017935 I 0.919
Pm017936 Prunus mume Pm017936 I 0.828
Pm028642 Prunus mume Pm028642 I 0.737
Pm020629 Prunus mume Pm020629 I 0.717
PRUPE_ppa025349mg Prunus persica PRUPE_ppa025349mg I 0.717
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.828
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.929
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.737
29883.m002035 Ricinus communis 29883.m002035 I 0.707
30174.m008898 Ricinus communis 30174.m008898 I 0.838
30174.m008897 Ricinus communis 30174.m008897 I 0.990
30072.m000955 Ricinus communis 30072.m000955 I 0.717
SapurV1A.1704s0040 Salix purpurea SapurV1A.1704s0040 I 0.708
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.808
SapurV1A.0378s0180 Salix purpurea SapurV1A.0378s0180 I 0.727
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.909
SapurV1A.0006s0980 Salix purpurea SapurV1A.0006s0980 I 0.717
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.929
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.838
Si015156m.g Setaria italica Si015156m.g I 0.707
Solyc01g091400.2 Solanum lycopersicum Solyc01g091400.2 I 0.818
Solyc01g098220.1 Solanum lycopersicum Solyc01g098220.1 I 0.727
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.798
PGSC0003DMG400022454 Solanum tuberosum PGSC0003DMG400022454 I 0.737
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.836
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.777
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.737
Sb07g023810 Sorghum bicolor Sb07g023810 I 0.717
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.848
TCM_005496 Theobroma cacao TCM_005496 I 0.783
TCM_004106 Theobroma cacao TCM_004106 I 0.737
TCM_005497 Theobroma cacao TCM_005497 I 0.939
TCM_025849 Theobroma cacao TCM_025849 I 0.737
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.828
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.828
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.828
TRIUR3_25587 Triticum urartu TRIUR3_25587 I 0.717
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.818
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.747
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.899
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.848
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.798
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.838